Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0696

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0695 and Dshi_0696 overlap by 4 nucleotidesDshi_0696 and Dshi_0697 are separated by 15 nucleotides Dshi_0695: Dshi_0695 - 3-isopropylmalate dehydratase, large subunit (RefSeq), at 701,599 to 702,993 _0695 Dshi_0696: Dshi_0696 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 702,990 to 703,649 _0696 Dshi_0697: Dshi_0697 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 703,665 to 704,675 _0697 Position (kb) 702 703 704Strain fitness (log2 ratio) -2 -1 0 1 2at 702.074 kb on - strand, within Dshi_0695at 702.125 kb on + strand, within Dshi_0695at 702.133 kb on - strand, within Dshi_0695at 702.228 kb on - strand, within Dshi_0695at 702.271 kb on + strand, within Dshi_0695at 702.351 kb on + strand, within Dshi_0695at 702.376 kb on + strand, within Dshi_0695at 702.376 kb on + strand, within Dshi_0695at 702.391 kb on + strand, within Dshi_0695at 702.448 kb on - strand, within Dshi_0695at 702.467 kb on - strand, within Dshi_0695at 702.484 kb on + strand, within Dshi_0695at 702.696 kb on + strand, within Dshi_0695at 702.774 kb on + strand, within Dshi_0695at 702.799 kb on - strand, within Dshi_0695at 702.809 kb on - strand, within Dshi_0695at 702.810 kb on + strand, within Dshi_0695at 702.830 kb on - strand, within Dshi_0695at 702.832 kb on + strand, within Dshi_0695at 702.872 kb on - strandat 702.883 kb on + strandat 702.901 kb on + strandat 703.054 kb on + strandat 703.087 kb on - strand, within Dshi_0696at 703.106 kb on + strand, within Dshi_0696at 703.164 kb on + strand, within Dshi_0696at 703.178 kb on - strand, within Dshi_0696at 703.254 kb on + strand, within Dshi_0696at 703.350 kb on + strand, within Dshi_0696at 703.358 kb on - strand, within Dshi_0696at 703.377 kb on + strand, within Dshi_0696at 703.449 kb on + strand, within Dshi_0696at 703.524 kb on - strand, within Dshi_0696at 703.583 kb on + strand, within Dshi_0696at 703.591 kb on - strandat 703.685 kb on - strandat 703.685 kb on - strandat 703.768 kb on + strand, within Dshi_0697at 703.772 kb on + strand, within Dshi_0697at 703.775 kb on - strand, within Dshi_0697at 703.775 kb on - strand, within Dshi_0697at 703.780 kb on - strand, within Dshi_0697at 703.786 kb on + strand, within Dshi_0697at 703.816 kb on - strand, within Dshi_0697at 703.881 kb on - strand, within Dshi_0697at 703.883 kb on + strand, within Dshi_0697at 703.891 kb on - strand, within Dshi_0697at 703.910 kb on + strand, within Dshi_0697at 703.975 kb on + strand, within Dshi_0697at 704.056 kb on - strand, within Dshi_0697at 704.065 kb on - strand, within Dshi_0697at 704.087 kb on + strand, within Dshi_0697at 704.097 kb on - strand, within Dshi_0697at 704.097 kb on - strand, within Dshi_0697at 704.097 kb on - strand, within Dshi_0697at 704.152 kb on + strand, within Dshi_0697at 704.152 kb on + strand, within Dshi_0697at 704.152 kb on + strand, within Dshi_0697at 704.230 kb on + strand, within Dshi_0697at 704.237 kb on + strand, within Dshi_0697at 704.237 kb on + strand, within Dshi_0697at 704.245 kb on - strand, within Dshi_0697at 704.359 kb on + strand, within Dshi_0697at 704.370 kb on + strand, within Dshi_0697at 704.445 kb on + strand, within Dshi_0697at 704.463 kb on - strand, within Dshi_0697at 704.464 kb on - strand, within Dshi_0697at 704.507 kb on - strand, within Dshi_0697at 704.543 kb on - strand, within Dshi_0697at 704.549 kb on + strand, within Dshi_0697at 704.549 kb on - strand, within Dshi_0697at 704.554 kb on + strand, within Dshi_0697at 704.555 kb on + strand, within Dshi_0697at 704.570 kb on + strand, within Dshi_0697at 704.575 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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702,074 - Dshi_0695 0.34 +1.1
702,125 + Dshi_0695 0.38 -0.6
702,133 - Dshi_0695 0.38 -0.7
702,228 - Dshi_0695 0.45 -0.3
702,271 + Dshi_0695 0.48 -0.2
702,351 + Dshi_0695 0.54 +2.0
702,376 + Dshi_0695 0.56 -0.3
702,376 + Dshi_0695 0.56 -0.6
702,391 + Dshi_0695 0.57 -0.9
702,448 - Dshi_0695 0.61 +0.3
702,467 - Dshi_0695 0.62 -0.1
702,484 + Dshi_0695 0.63 +0.3
702,696 + Dshi_0695 0.79 +0.3
702,774 + Dshi_0695 0.84 -0.7
702,799 - Dshi_0695 0.86 -0.3
702,809 - Dshi_0695 0.87 +0.6
702,810 + Dshi_0695 0.87 -0.3
702,830 - Dshi_0695 0.88 -0.5
702,832 + Dshi_0695 0.88 -0.4
702,872 - -0.5
702,883 + +0.2
702,901 + -0.4
703,054 + -0.2
703,087 - Dshi_0696 0.15 +0.4
703,106 + Dshi_0696 0.18 +0.7
703,164 + Dshi_0696 0.26 -0.8
703,178 - Dshi_0696 0.28 +0.5
703,254 + Dshi_0696 0.40 +0.2
703,350 + Dshi_0696 0.55 -0.4
703,358 - Dshi_0696 0.56 +0.3
703,377 + Dshi_0696 0.59 +0.9
703,449 + Dshi_0696 0.70 -0.7
703,524 - Dshi_0696 0.81 -0.4
703,583 + Dshi_0696 0.90 +0.7
703,591 - -0.3
703,685 - -0.8
703,685 - +1.0
703,768 + Dshi_0697 0.10 +0.1
703,772 + Dshi_0697 0.11 -0.1
703,775 - Dshi_0697 0.11 -0.9
703,775 - Dshi_0697 0.11 +0.8
703,780 - Dshi_0697 0.11 +0.0
703,786 + Dshi_0697 0.12 -0.2
703,816 - Dshi_0697 0.15 +1.9
703,881 - Dshi_0697 0.21 +0.0
703,883 + Dshi_0697 0.22 -0.7
703,891 - Dshi_0697 0.22 +0.0
703,910 + Dshi_0697 0.24 -0.0
703,975 + Dshi_0697 0.31 -0.0
704,056 - Dshi_0697 0.39 -1.0
704,065 - Dshi_0697 0.40 -0.9
704,087 + Dshi_0697 0.42 -0.2
704,097 - Dshi_0697 0.43 -0.4
704,097 - Dshi_0697 0.43 +0.4
704,097 - Dshi_0697 0.43 +0.1
704,152 + Dshi_0697 0.48 +1.0
704,152 + Dshi_0697 0.48 +0.1
704,152 + Dshi_0697 0.48 +0.2
704,230 + Dshi_0697 0.56 -0.3
704,237 + Dshi_0697 0.57 -0.1
704,237 + Dshi_0697 0.57 +0.4
704,245 - Dshi_0697 0.57 -1.3
704,359 + Dshi_0697 0.69 +0.2
704,370 + Dshi_0697 0.70 +0.7
704,445 + Dshi_0697 0.77 +0.5
704,463 - Dshi_0697 0.79 -0.3
704,464 - Dshi_0697 0.79 +0.0
704,507 - Dshi_0697 0.83 +0.2
704,543 - Dshi_0697 0.87 +0.2
704,549 + Dshi_0697 0.87 +0.0
704,549 - Dshi_0697 0.87 -0.2
704,554 + Dshi_0697 0.88 -0.5
704,555 + Dshi_0697 0.88 -2.0
704,570 + Dshi_0697 0.90 +0.1
704,575 + +0.4

Or see this region's nucleotide sequence