Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0644 and Dshi_0645 are separated by 99 nucleotides Dshi_0645 and Dshi_0646 are separated by 58 nucleotides
Dshi_0644: Dshi_0644 - excinuclease ABC, C subunit (RefSeq), at 642,411 to 644,306
_0644
Dshi_0645: Dshi_0645 - TRAP transporter solute receptor, TAXI family (RefSeq), at 644,406 to 645,413
_0645
Dshi_0646: Dshi_0646 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 645,472 to 647,574
_0646
Position (kb) 644
645
646 Strain fitness (log2 ratio) -1
0
1 at 643.657 kb on + strand, within Dshi_0644 at 643.657 kb on + strand, within Dshi_0644 at 643.756 kb on + strand, within Dshi_0644 at 643.963 kb on - strand, within Dshi_0644 at 644.020 kb on - strand, within Dshi_0644 at 644.178 kb on + strand at 644.375 kb on + strand at 644.377 kb on + strand at 644.420 kb on - strand at 644.425 kb on - strand at 644.458 kb on - strand at 644.552 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.571 kb on - strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.856 kb on + strand, within Dshi_0645 at 644.964 kb on - strand, within Dshi_0645 at 645.068 kb on + strand, within Dshi_0645 at 645.106 kb on - strand, within Dshi_0645 at 645.170 kb on + strand, within Dshi_0645 at 645.208 kb on + strand, within Dshi_0645 at 645.406 kb on - strand at 645.406 kb on - strand at 645.657 kb on - strand at 645.662 kb on - strand at 645.708 kb on - strand, within Dshi_0646 at 645.844 kb on - strand, within Dshi_0646 at 645.878 kb on - strand, within Dshi_0646 at 645.909 kb on + strand, within Dshi_0646 at 645.911 kb on - strand, within Dshi_0646 at 646.026 kb on - strand, within Dshi_0646 at 646.154 kb on + strand, within Dshi_0646 at 646.185 kb on + strand, within Dshi_0646 at 646.185 kb on + strand, within Dshi_0646
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 643,657 + Dshi_0644 0.66 -0.8 643,657 + Dshi_0644 0.66 -0.8 643,756 + Dshi_0644 0.71 -1.3 643,963 - Dshi_0644 0.82 +0.1 644,020 - Dshi_0644 0.85 -0.6 644,178 + -0.3 644,375 + +0.0 644,377 + -0.1 644,420 - -0.4 644,425 - +1.3 644,458 - +0.5 644,552 + Dshi_0645 0.14 +0.9 644,563 + Dshi_0645 0.16 -0.4 644,563 + Dshi_0645 0.16 -0.5 644,571 - Dshi_0645 0.16 -0.8 644,654 + Dshi_0645 0.25 +0.1 644,654 + Dshi_0645 0.25 -1.0 644,856 + Dshi_0645 0.45 -0.0 644,964 - Dshi_0645 0.55 -0.3 645,068 + Dshi_0645 0.66 -1.6 645,106 - Dshi_0645 0.69 +0.8 645,170 + Dshi_0645 0.76 -0.4 645,208 + Dshi_0645 0.80 +0.3 645,406 - +0.5 645,406 - -0.2 645,657 - -0.1 645,662 - -0.3 645,708 - Dshi_0646 0.11 -0.6 645,844 - Dshi_0646 0.18 -0.5 645,878 - Dshi_0646 0.19 -0.4 645,909 + Dshi_0646 0.21 -0.4 645,911 - Dshi_0646 0.21 -0.2 646,026 - Dshi_0646 0.26 -0.3 646,154 + Dshi_0646 0.32 -1.6 646,185 + Dshi_0646 0.34 -0.2 646,185 + Dshi_0646 0.34 +0.4
Or see this region's nucleotide sequence