Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0370 and Dshi_0371 are separated by 18 nucleotides Dshi_0371 and Dshi_0372 are separated by 100 nucleotides Dshi_0372 and Dshi_0373 are separated by 144 nucleotides
Dshi_0370: Dshi_0370 - hypothetical protein (RefSeq), at 353,964 to 354,554
_0370
Dshi_0371: Dshi_0371 - short-chain dehydrogenase/reductase SDR (RefSeq), at 354,573 to 355,304
_0371
Dshi_0372: Dshi_0372 - hypothetical protein (RefSeq), at 355,405 to 355,728
_0372
Dshi_0373: Dshi_0373 - Long-chain-fatty-acid--CoA ligase (RefSeq), at 355,873 to 357,843
_0373
Position (kb) 355
356 Strain fitness (log2 ratio) -1
0
1 at 354.424 kb on + strand, within Dshi_0370 at 354.426 kb on - strand, within Dshi_0370 at 354.489 kb on + strand, within Dshi_0370 at 354.502 kb on - strand at 354.517 kb on - strand at 354.571 kb on - strand at 354.618 kb on - strand at 354.645 kb on + strand at 354.694 kb on - strand, within Dshi_0371 at 354.711 kb on + strand, within Dshi_0371 at 354.731 kb on + strand, within Dshi_0371 at 354.769 kb on + strand, within Dshi_0371 at 354.803 kb on - strand, within Dshi_0371 at 354.926 kb on + strand, within Dshi_0371 at 354.940 kb on - strand, within Dshi_0371 at 355.010 kb on + strand, within Dshi_0371 at 355.022 kb on + strand, within Dshi_0371 at 355.199 kb on + strand, within Dshi_0371 at 355.265 kb on + strand at 355.459 kb on + strand, within Dshi_0372 at 355.535 kb on - strand, within Dshi_0372 at 355.575 kb on + strand, within Dshi_0372 at 355.623 kb on + strand, within Dshi_0372 at 355.693 kb on - strand, within Dshi_0372 at 355.697 kb on - strand at 355.912 kb on + strand at 355.960 kb on - strand at 355.990 kb on + strand at 355.997 kb on - strand at 355.998 kb on - strand at 356.066 kb on - strand at 356.066 kb on - strand at 356.109 kb on - strand, within Dshi_0373 at 356.125 kb on + strand, within Dshi_0373 at 356.200 kb on - strand, within Dshi_0373 at 356.214 kb on + strand, within Dshi_0373 at 356.287 kb on - strand, within Dshi_0373 at 356.292 kb on + strand, within Dshi_0373 at 356.297 kb on + strand, within Dshi_0373 at 356.448 kb on + strand, within Dshi_0373 at 356.456 kb on - strand, within Dshi_0373 at 356.483 kb on - strand, within Dshi_0373 at 356.488 kb on + strand, within Dshi_0373 at 356.491 kb on - strand, within Dshi_0373 at 356.491 kb on - strand, within Dshi_0373 at 356.571 kb on - strand, within Dshi_0373 at 356.619 kb on + strand, within Dshi_0373 at 356.635 kb on - strand, within Dshi_0373 at 356.637 kb on - strand, within Dshi_0373 at 356.680 kb on - strand, within Dshi_0373 at 356.706 kb on - strand, within Dshi_0373 at 356.723 kb on - strand, within Dshi_0373
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 354,424 + Dshi_0370 0.78 -1.5 354,426 - Dshi_0370 0.78 -0.4 354,489 + Dshi_0370 0.89 +0.3 354,502 - +0.0 354,517 - -0.3 354,571 - +0.2 354,618 - -0.7 354,645 + +0.5 354,694 - Dshi_0371 0.17 -0.7 354,711 + Dshi_0371 0.19 -0.0 354,731 + Dshi_0371 0.22 +0.1 354,769 + Dshi_0371 0.27 +1.1 354,803 - Dshi_0371 0.31 +1.6 354,926 + Dshi_0371 0.48 +0.7 354,940 - Dshi_0371 0.50 +1.1 355,010 + Dshi_0371 0.60 +0.3 355,022 + Dshi_0371 0.61 -0.8 355,199 + Dshi_0371 0.86 -0.5 355,265 + -0.0 355,459 + Dshi_0372 0.17 -0.3 355,535 - Dshi_0372 0.40 +0.2 355,575 + Dshi_0372 0.52 +0.8 355,623 + Dshi_0372 0.67 -1.3 355,693 - Dshi_0372 0.89 -0.2 355,697 - -0.1 355,912 + -0.1 355,960 - -0.1 355,990 + +0.3 355,997 - -0.9 355,998 - -0.4 356,066 - -0.0 356,066 - -0.3 356,109 - Dshi_0373 0.12 +1.1 356,125 + Dshi_0373 0.13 -0.1 356,200 - Dshi_0373 0.17 -1.6 356,214 + Dshi_0373 0.17 +0.0 356,287 - Dshi_0373 0.21 +0.8 356,292 + Dshi_0373 0.21 +0.3 356,297 + Dshi_0373 0.22 -0.8 356,448 + Dshi_0373 0.29 +0.2 356,456 - Dshi_0373 0.30 -0.3 356,483 - Dshi_0373 0.31 -0.7 356,488 + Dshi_0373 0.31 +0.2 356,491 - Dshi_0373 0.31 +0.3 356,491 - Dshi_0373 0.31 +0.3 356,571 - Dshi_0373 0.35 -0.8 356,619 + Dshi_0373 0.38 +0.0 356,635 - Dshi_0373 0.39 +0.2 356,637 - Dshi_0373 0.39 +0.2 356,680 - Dshi_0373 0.41 -0.1 356,706 - Dshi_0373 0.42 +1.1 356,723 - Dshi_0373 0.43 -0.2
Or see this region's nucleotide sequence