Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0322 and Dshi_0323 overlap by 4 nucleotides Dshi_0323 and Dshi_0324 are separated by 52 nucleotides Dshi_0324 and Dshi_0325 are separated by 87 nucleotides Dshi_0325 and Dshi_0326 are separated by 62 nucleotides
Dshi_0322: Dshi_0322 - putative phosphohistidine phosphatase, SixA (RefSeq), at 310,800 to 311,300
_0322
Dshi_0323: Dshi_0323 - hypothetical protein (RefSeq), at 311,297 to 311,920
_0323
Dshi_0324: Dshi_0324 - acetylglutamate kinase (RefSeq), at 311,973 to 312,836
_0324
Dshi_0325: Dshi_0325 - short-chain dehydrogenase/reductase SDR (RefSeq), at 312,924 to 313,655
_0325
Dshi_0326: Dshi_0326 - GTP-binding protein HSR1-related (RefSeq), at 313,718 to 314,371
_0326
Position (kb) 311
312
313 Strain fitness (log2 ratio) -1
0
1 at 311.516 kb on + strand, within Dshi_0323 at 311.523 kb on + strand, within Dshi_0323 at 311.977 kb on - strand at 312.893 kb on + strand at 312.893 kb on + strand at 312.901 kb on - strand at 312.901 kb on - strand at 312.901 kb on - strand at 312.901 kb on - strand at 312.937 kb on - strand at 313.027 kb on + strand, within Dshi_0325 at 313.027 kb on - strand, within Dshi_0325 at 313.187 kb on + strand, within Dshi_0325 at 313.343 kb on - strand, within Dshi_0325 at 313.356 kb on + strand, within Dshi_0325 at 313.370 kb on - strand, within Dshi_0325 at 313.383 kb on + strand, within Dshi_0325
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 311,516 + Dshi_0323 0.35 +0.1 311,523 + Dshi_0323 0.36 -1.2 311,977 - -1.1 312,893 + +0.6 312,893 + -0.6 312,901 - +1.1 312,901 - +0.5 312,901 - +0.1 312,901 - -0.3 312,937 - +1.4 313,027 + Dshi_0325 0.14 -1.5 313,027 - Dshi_0325 0.14 +0.5 313,187 + Dshi_0325 0.36 +0.9 313,343 - Dshi_0325 0.57 -0.5 313,356 + Dshi_0325 0.59 -0.3 313,370 - Dshi_0325 0.61 +0.3 313,383 + Dshi_0325 0.63 -0.6
Or see this region's nucleotide sequence