Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2706

Experiment: BHIS with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2703 and BT2704 are separated by 11 nucleotidesBT2704 and BT2705 are separated by 159 nucleotidesBT2705 and BT2706 are separated by 1 nucleotidesBT2706 and BT2707 are separated by 15 nucleotides BT2703: BT2703 - 30S ribosomal protein S11 (NCBI ptt file), at 3,366,096 to 3,366,485 BT2703 BT2704: BT2704 - 30S ribosomal protein S13 (NCBI ptt file), at 3,366,497 to 3,366,877 BT2704 BT2705: BT2705 - translation initiation factor IF-1 (NCBI ptt file), at 3,367,037 to 3,367,255 BT2705 BT2706: BT2706 - methionine aminopeptidase (NCBI ptt file), at 3,367,257 to 3,368,054 BT2706 BT2707: BT2707 - preprotein translocase SecY subunit (NCBI ptt file), at 3,368,070 to 3,369,413 BT2707 Position (kb) 3367 3368 3369Strain fitness (log2 ratio) -1 0 1 2at 3367.269 kb on - strandat 3367.269 kb on - strandat 3367.269 kb on - strandat 3367.269 kb on - strandat 3367.341 kb on - strand, within BT2706at 3367.478 kb on - strand, within BT2706at 3367.497 kb on - strand, within BT2706at 3367.497 kb on - strand, within BT2706at 3367.501 kb on - strand, within BT2706at 3367.593 kb on - strand, within BT2706at 3367.627 kb on - strand, within BT2706at 3367.627 kb on - strand, within BT2706at 3367.647 kb on - strand, within BT2706at 3367.647 kb on - strand, within BT2706at 3367.649 kb on - strand, within BT2706at 3367.649 kb on - strand, within BT2706at 3367.649 kb on - strand, within BT2706at 3367.696 kb on - strand, within BT2706at 3367.768 kb on - strand, within BT2706at 3367.816 kb on - strand, within BT2706at 3367.836 kb on - strand, within BT2706at 3367.971 kb on - strand, within BT2706at 3368.007 kb on - strandat 3368.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimetridazole 0.025 mM
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3,367,269 - +1.5
3,367,269 - -0.6
3,367,269 - -0.3
3,367,269 - -0.0
3,367,341 - BT2706 0.11 +0.9
3,367,478 - BT2706 0.28 +1.5
3,367,497 - BT2706 0.30 -0.0
3,367,497 - BT2706 0.30 +0.5
3,367,501 - BT2706 0.31 -0.4
3,367,593 - BT2706 0.42 +1.0
3,367,627 - BT2706 0.46 +1.0
3,367,627 - BT2706 0.46 +0.4
3,367,647 - BT2706 0.49 -0.0
3,367,647 - BT2706 0.49 +0.8
3,367,649 - BT2706 0.49 +0.2
3,367,649 - BT2706 0.49 +0.6
3,367,649 - BT2706 0.49 +2.2
3,367,696 - BT2706 0.55 +0.6
3,367,768 - BT2706 0.64 +1.3
3,367,816 - BT2706 0.70 +1.1
3,367,836 - BT2706 0.73 -0.0
3,367,971 - BT2706 0.89 -0.0
3,368,007 - +1.1
3,368,057 - +1.0

Or see this region's nucleotide sequence