Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0967

Experiment: BHIS with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0965 and BT0966 are separated by 63 nucleotidesBT0966 and BT0967 are separated by 94 nucleotidesBT0967 and BT0968 are separated by 43 nucleotides BT0965: BT0965 - putative anti-sigma factor (NCBI ptt file), at 1,182,131 to 1,183,105 BT0965 BT0966: BT0966 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 1,183,169 to 1,183,720 BT0966 BT0967: BT0967 - hypothetical protein (NCBI ptt file), at 1,183,815 to 1,184,036 BT0967 BT0968: BT0968 - conserved hypothetical protein (NCBI ptt file), at 1,184,080 to 1,187,214 BT0968 Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -3 -2 -1 0 1at 1182.819 kb on - strand, within BT0965at 1182.826 kb on + strand, within BT0965at 1182.881 kb on + strand, within BT0965at 1183.121 kb on + strandat 1183.124 kb on - strandat 1183.198 kb on + strandat 1183.198 kb on + strandat 1183.268 kb on + strand, within BT0966at 1183.268 kb on + strand, within BT0966at 1183.274 kb on + strand, within BT0966at 1183.312 kb on + strand, within BT0966at 1183.313 kb on - strand, within BT0966at 1183.359 kb on - strand, within BT0966at 1183.361 kb on + strand, within BT0966at 1183.364 kb on + strand, within BT0966at 1183.370 kb on + strand, within BT0966at 1183.371 kb on - strand, within BT0966at 1183.371 kb on - strand, within BT0966at 1183.433 kb on + strand, within BT0966at 1183.438 kb on - strand, within BT0966at 1183.452 kb on + strand, within BT0966at 1183.452 kb on + strand, within BT0966at 1183.504 kb on - strand, within BT0966at 1183.603 kb on + strand, within BT0966at 1183.603 kb on + strand, within BT0966at 1183.605 kb on + strand, within BT0966at 1183.636 kb on - strand, within BT0966at 1183.638 kb on + strand, within BT0966at 1183.638 kb on + strand, within BT0966at 1183.646 kb on - strand, within BT0966at 1183.711 kb on + strandat 1183.807 kb on + strandat 1183.817 kb on - strandat 1183.838 kb on - strand, within BT0967at 1183.899 kb on - strand, within BT0967at 1183.959 kb on + strand, within BT0967at 1184.139 kb on + strandat 1184.208 kb on + strandat 1184.274 kb on - strandat 1184.393 kb on + strandat 1184.532 kb on - strand, within BT0968at 1184.565 kb on - strand, within BT0968at 1184.576 kb on - strand, within BT0968at 1184.609 kb on + strand, within BT0968at 1184.728 kb on + strand, within BT0968at 1184.738 kb on + strand, within BT0968at 1184.787 kb on + strand, within BT0968at 1184.792 kb on - strand, within BT0968at 1185.033 kb on + strand, within BT0968

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimetridazole 0.025 mM
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1,182,819 - BT0965 0.71 -2.1
1,182,826 + BT0965 0.71 +1.1
1,182,881 + BT0965 0.77 +0.1
1,183,121 + -0.5
1,183,124 - -0.7
1,183,198 + +0.1
1,183,198 + -0.6
1,183,268 + BT0966 0.18 +0.1
1,183,268 + BT0966 0.18 -0.8
1,183,274 + BT0966 0.19 +0.1
1,183,312 + BT0966 0.26 -0.3
1,183,313 - BT0966 0.26 +0.1
1,183,359 - BT0966 0.34 -0.9
1,183,361 + BT0966 0.35 -1.7
1,183,364 + BT0966 0.35 -2.5
1,183,370 + BT0966 0.36 -1.2
1,183,371 - BT0966 0.37 +0.1
1,183,371 - BT0966 0.37 +0.1
1,183,433 + BT0966 0.48 -1.3
1,183,438 - BT0966 0.49 -1.3
1,183,452 + BT0966 0.51 +0.4
1,183,452 + BT0966 0.51 -2.1
1,183,504 - BT0966 0.61 -0.7
1,183,603 + BT0966 0.79 -1.2
1,183,603 + BT0966 0.79 -1.3
1,183,605 + BT0966 0.79 +0.1
1,183,636 - BT0966 0.85 -2.1
1,183,638 + BT0966 0.85 +1.7
1,183,638 + BT0966 0.85 +0.7
1,183,646 - BT0966 0.86 -1.0
1,183,711 + +0.4
1,183,807 + -0.9
1,183,817 - +1.1
1,183,838 - BT0967 0.10 -0.5
1,183,899 - BT0967 0.38 -3.7
1,183,959 + BT0967 0.65 -1.3
1,184,139 + -0.9
1,184,208 + +1.1
1,184,274 - +0.5
1,184,393 + -2.3
1,184,532 - BT0968 0.14 -0.5
1,184,565 - BT0968 0.15 +1.7
1,184,576 - BT0968 0.16 -1.3
1,184,609 + BT0968 0.17 +0.6
1,184,728 + BT0968 0.21 -0.5
1,184,738 + BT0968 0.21 -1.3
1,184,787 + BT0968 0.23 -0.9
1,184,792 - BT0968 0.23 +1.1
1,185,033 + BT0968 0.30 +1.1

Or see this region's nucleotide sequence