Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0576

Experiment: BHIS with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0574 and BT0575 are separated by 106 nucleotidesBT0575 and BT0576 are separated by 127 nucleotidesBT0576 and BT0577 are separated by 7 nucleotides BT0574: BT0574 - hypothetical protein (NCBI ptt file), at 710,712 to 711,047 BT0574 BT0575: BT0575 - conserved hypothetical protein (NCBI ptt file), at 711,154 to 711,597 BT0575 BT0576: BT0576 - hypothetical protein (NCBI ptt file), at 711,725 to 712,447 BT0576 BT0577: BT0577 - LysM-repeat proteins and domains (NCBI ptt file), at 712,455 to 714,221 BT0577 Position (kb) 711 712 713Strain fitness (log2 ratio) -2 -1 0 1at 711.080 kb on + strandat 711.632 kb on + strandat 711.632 kb on + strandat 711.637 kb on + strandat 711.637 kb on + strandat 711.763 kb on + strandat 712.047 kb on - strand, within BT0576at 712.206 kb on - strand, within BT0576

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimetridazole 0.025 mM
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711,080 + -0.8
711,632 + -2.1
711,632 + +1.7
711,637 + -1.0
711,637 + +1.6
711,763 + -1.3
712,047 - BT0576 0.45 -2.6
712,206 - BT0576 0.67 +1.0

Or see this region's nucleotide sequence