Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0146 and DVU0147 overlap by 4 nucleotides DVU0147 and DVU0148 are separated by 72 nucleotides DVU0148 and DVU0149 are separated by 22 nucleotides DVU0149 and DVU0150 are separated by 21 nucleotides DVU0150 and DVU0151 are separated by 319 nucleotides
DVU0146: DVU0146 - hypothetical protein (TIGR), at 180,580 to 181,389
DVU0146
DVU0147: DVU0147 - lipoprotein, putative (TIGR), at 181,386 to 181,646
DVU0147
DVU0148: DVU0148 - lipoprotein, putative (TIGR), at 181,719 to 182,330
DVU0148
DVU0149: DVU0149 - membrane protein, putative (TIGR), at 182,353 to 183,405
DVU0149
DVU0150: DVU0150 - membrane protein, putative (TIGR), at 183,427 to 183,723
DVU0150
DVU0151: DVU0151 - HAMP domain/sigma-54 interaction domain protein (TIGR), at 184,043 to 186,916
DVU0151
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1
2
3 at 181.378 kb on + strand at 181.386 kb on - strand at 181.387 kb on + strand at 181.471 kb on - strand, within DVU0147 at 181.485 kb on - strand, within DVU0147 at 181.535 kb on + strand, within DVU0147 at 181.539 kb on + strand, within DVU0147 at 181.565 kb on - strand, within DVU0147 at 181.610 kb on - strand, within DVU0147 at 181.613 kb on - strand, within DVU0147 at 181.625 kb on + strand at 181.654 kb on - strand at 181.684 kb on + strand at 181.758 kb on + strand at 181.769 kb on - strand at 181.836 kb on + strand, within DVU0148 at 181.836 kb on + strand, within DVU0148 at 181.869 kb on + strand, within DVU0148 at 181.892 kb on - strand, within DVU0148 at 181.926 kb on + strand, within DVU0148 at 181.985 kb on + strand, within DVU0148 at 182.022 kb on + strand, within DVU0148 at 182.029 kb on + strand, within DVU0148 at 182.036 kb on + strand, within DVU0148 at 182.061 kb on - strand, within DVU0148 at 182.061 kb on - strand, within DVU0148 at 182.089 kb on + strand, within DVU0148 at 182.137 kb on - strand, within DVU0148 at 182.158 kb on - strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.290 kb on - strand at 182.333 kb on - strand at 182.379 kb on - strand at 182.390 kb on + strand at 182.397 kb on - strand at 182.402 kb on - strand at 182.436 kb on + strand at 182.444 kb on - strand at 182.474 kb on + strand, within DVU0149 at 182.474 kb on + strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.515 kb on + strand, within DVU0149 at 182.691 kb on + strand, within DVU0149 at 182.713 kb on - strand, within DVU0149 at 182.715 kb on + strand, within DVU0149 at 182.836 kb on - strand, within DVU0149 at 182.870 kb on + strand, within DVU0149 at 182.876 kb on + strand, within DVU0149 at 182.878 kb on - strand, within DVU0149 at 182.957 kb on + strand, within DVU0149 at 182.973 kb on + strand, within DVU0149 at 182.998 kb on - strand, within DVU0149 at 183.004 kb on + strand, within DVU0149 at 183.012 kb on - strand, within DVU0149 at 183.063 kb on + strand, within DVU0149 at 183.081 kb on - strand, within DVU0149 at 183.126 kb on - strand, within DVU0149 at 183.199 kb on - strand, within DVU0149 at 183.209 kb on + strand, within DVU0149 at 183.335 kb on - strand at 183.459 kb on - strand, within DVU0150 at 183.532 kb on + strand, within DVU0150 at 183.533 kb on - strand, within DVU0150 at 183.607 kb on - strand, within DVU0150 at 183.710 kb on + strand at 183.767 kb on + strand at 183.767 kb on + strand at 184.078 kb on + strand at 184.086 kb on - strand at 184.095 kb on + strand at 184.111 kb on - strand at 184.209 kb on - strand at 184.229 kb on + strand at 184.229 kb on + strand at 184.237 kb on - strand at 184.354 kb on - strand, within DVU0151 at 184.363 kb on + strand, within DVU0151 at 184.363 kb on + strand, within DVU0151 at 184.371 kb on - strand, within DVU0151 at 184.375 kb on + strand, within DVU0151 at 184.399 kb on + strand, within DVU0151
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 181,378 + +0.3 181,386 - -0.1 181,387 + +0.1 181,471 - DVU0147 0.33 -0.2 181,485 - DVU0147 0.38 +0.8 181,535 + DVU0147 0.57 -0.4 181,539 + DVU0147 0.59 -0.1 181,565 - DVU0147 0.69 -0.2 181,610 - DVU0147 0.86 -0.2 181,613 - DVU0147 0.87 -0.1 181,625 + -1.2 181,654 - +0.1 181,684 + -0.4 181,758 + -0.2 181,769 - +1.8 181,836 + DVU0148 0.19 -0.3 181,836 + DVU0148 0.19 +0.2 181,869 + DVU0148 0.25 -0.3 181,892 - DVU0148 0.28 -0.5 181,926 + DVU0148 0.34 +0.1 181,985 + DVU0148 0.43 -0.5 182,022 + DVU0148 0.50 -0.5 182,029 + DVU0148 0.51 +0.1 182,036 + DVU0148 0.52 +1.1 182,061 - DVU0148 0.56 +0.8 182,061 - DVU0148 0.56 -1.0 182,089 + DVU0148 0.60 -1.2 182,137 - DVU0148 0.68 -0.1 182,158 - DVU0148 0.72 -0.2 182,206 + DVU0148 0.80 +0.3 182,206 + DVU0148 0.80 -1.2 182,206 + DVU0148 0.80 -1.2 182,206 + DVU0148 0.80 +0.8 182,214 - DVU0148 0.81 -0.3 182,214 - DVU0148 0.81 +0.2 182,214 - DVU0148 0.81 -0.8 182,214 - DVU0148 0.81 +0.0 182,214 - DVU0148 0.81 -0.3 182,290 - -0.1 182,333 - -0.8 182,379 - -0.4 182,390 + -0.2 182,397 - -0.0 182,402 - -0.8 182,436 + -0.1 182,444 - -0.8 182,474 + DVU0149 0.11 -1.0 182,474 + DVU0149 0.11 -0.2 182,482 - DVU0149 0.12 -0.8 182,482 - DVU0149 0.12 +0.1 182,482 - DVU0149 0.12 -0.6 182,515 + DVU0149 0.15 -0.3 182,691 + DVU0149 0.32 +0.8 182,713 - DVU0149 0.34 -1.2 182,715 + DVU0149 0.34 -0.1 182,836 - DVU0149 0.46 +3.1 182,870 + DVU0149 0.49 -0.5 182,876 + DVU0149 0.50 -0.2 182,878 - DVU0149 0.50 +0.4 182,957 + DVU0149 0.57 -0.2 182,973 + DVU0149 0.59 -0.8 182,998 - DVU0149 0.61 -0.7 183,004 + DVU0149 0.62 -0.5 183,012 - DVU0149 0.63 -0.3 183,063 + DVU0149 0.67 -0.4 183,081 - DVU0149 0.69 -0.5 183,126 - DVU0149 0.73 -1.2 183,199 - DVU0149 0.80 -0.5 183,209 + DVU0149 0.81 -0.8 183,335 - +0.0 183,459 - DVU0150 0.11 +0.2 183,532 + DVU0150 0.35 -0.2 183,533 - DVU0150 0.36 -0.3 183,607 - DVU0150 0.61 +0.3 183,710 + -0.7 183,767 + -0.2 183,767 + -1.0 184,078 + -0.2 184,086 - +0.8 184,095 + -0.8 184,111 - -0.2 184,209 - +0.8 184,229 + +0.7 184,229 + +1.2 184,237 - +0.5 184,354 - DVU0151 0.11 -0.2 184,363 + DVU0151 0.11 +2.4 184,363 + DVU0151 0.11 -0.8 184,371 - DVU0151 0.11 -0.3 184,375 + DVU0151 0.12 +0.8 184,399 + DVU0151 0.12 +0.1
Or see this region's nucleotide sequence