Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0059

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0058 and DVU0059 overlap by 4 nucleotidesDVU0059 and acrA are separated by 154 nucleotides DVU0058: DVU0058 - efflux transporter, RND family, MFP subunit (TIGR), at 64,527 to 65,678 DVU0058 DVU0059: DVU0059 - AcrB/AcrD/AcrF family protein (TIGR), at 65,675 to 69,385 DVU0059 DVU0060: acrA - efflux transporter, RND family, MFP subunit (TIGR), at 69,540 to 70,724 acrA Position (kb) 65 66 67 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2 3at 64.675 kb on + strand, within DVU0058at 64.675 kb on + strand, within DVU0058at 64.675 kb on + strand, within DVU0058at 64.683 kb on - strand, within DVU0058at 64.689 kb on + strand, within DVU0058at 64.702 kb on - strand, within DVU0058at 64.743 kb on + strand, within DVU0058at 64.819 kb on - strand, within DVU0058at 64.860 kb on - strand, within DVU0058at 64.884 kb on + strand, within DVU0058at 64.907 kb on + strand, within DVU0058at 64.915 kb on - strand, within DVU0058at 64.917 kb on + strand, within DVU0058at 64.925 kb on - strand, within DVU0058at 64.952 kb on + strand, within DVU0058at 64.999 kb on - strand, within DVU0058at 65.050 kb on - strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.073 kb on + strand, within DVU0058at 65.115 kb on + strand, within DVU0058at 65.116 kb on - strand, within DVU0058at 65.151 kb on - strand, within DVU0058at 65.177 kb on + strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.185 kb on - strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.210 kb on + strand, within DVU0058at 65.218 kb on - strand, within DVU0058at 65.235 kb on + strand, within DVU0058at 65.246 kb on + strand, within DVU0058at 65.255 kb on - strand, within DVU0058at 65.257 kb on + strand, within DVU0058at 65.461 kb on + strand, within DVU0058at 65.469 kb on + strand, within DVU0058at 65.540 kb on - strand, within DVU0058at 65.589 kb on - strandat 65.594 kb on - strandat 65.621 kb on - strandat 65.744 kb on - strandat 65.782 kb on + strandat 65.782 kb on + strandat 65.782 kb on + strandat 65.782 kb on + strandat 65.790 kb on - strandat 65.790 kb on - strandat 65.798 kb on - strandat 65.818 kb on + strandat 65.876 kb on - strandat 65.946 kb on - strandat 65.953 kb on + strandat 66.014 kb on - strandat 66.019 kb on + strandat 66.022 kb on - strandat 66.024 kb on + strandat 66.024 kb on + strandat 66.081 kb on + strand, within DVU0059at 66.118 kb on + strand, within DVU0059at 66.120 kb on + strand, within DVU0059at 66.120 kb on + strand, within DVU0059at 66.128 kb on - strand, within DVU0059at 66.128 kb on - strand, within DVU0059at 66.128 kb on - strand, within DVU0059at 66.167 kb on - strand, within DVU0059at 66.230 kb on + strand, within DVU0059at 66.241 kb on + strand, within DVU0059at 66.243 kb on - strand, within DVU0059at 66.297 kb on - strand, within DVU0059at 66.351 kb on - strand, within DVU0059at 66.437 kb on + strand, within DVU0059at 66.445 kb on - strand, within DVU0059at 66.445 kb on - strand, within DVU0059at 66.471 kb on + strand, within DVU0059at 66.479 kb on - strand, within DVU0059at 66.515 kb on + strand, within DVU0059at 66.621 kb on + strand, within DVU0059at 66.747 kb on + strand, within DVU0059at 66.784 kb on - strand, within DVU0059at 66.796 kb on + strand, within DVU0059at 66.883 kb on + strand, within DVU0059at 67.000 kb on + strand, within DVU0059at 67.022 kb on - strand, within DVU0059at 67.048 kb on + strand, within DVU0059at 67.112 kb on - strand, within DVU0059at 67.191 kb on - strand, within DVU0059at 67.253 kb on - strand, within DVU0059at 67.283 kb on - strand, within DVU0059at 67.284 kb on + strand, within DVU0059at 67.296 kb on + strand, within DVU0059at 67.366 kb on + strand, within DVU0059at 67.366 kb on + strand, within DVU0059at 67.366 kb on + strand, within DVU0059at 67.366 kb on + strand, within DVU0059at 67.374 kb on - strand, within DVU0059at 67.374 kb on - strand, within DVU0059at 67.374 kb on - strand, within DVU0059at 67.374 kb on - strand, within DVU0059at 67.374 kb on - strand, within DVU0059at 67.396 kb on + strand, within DVU0059at 67.457 kb on + strand, within DVU0059at 67.470 kb on + strand, within DVU0059at 67.548 kb on + strand, within DVU0059at 67.560 kb on + strand, within DVU0059at 67.570 kb on + strand, within DVU0059at 67.570 kb on + strand, within DVU0059at 67.578 kb on - strand, within DVU0059at 67.602 kb on - strand, within DVU0059at 67.639 kb on + strand, within DVU0059at 67.639 kb on + strand, within DVU0059at 67.743 kb on + strand, within DVU0059at 67.751 kb on - strand, within DVU0059at 67.753 kb on + strand, within DVU0059at 67.770 kb on - strand, within DVU0059at 67.779 kb on + strand, within DVU0059at 67.781 kb on + strand, within DVU0059at 67.782 kb on - strand, within DVU0059at 67.805 kb on - strand, within DVU0059at 67.805 kb on - strand, within DVU0059at 67.811 kb on - strand, within DVU0059at 67.816 kb on + strand, within DVU0059at 67.816 kb on + strand, within DVU0059at 67.824 kb on - strand, within DVU0059at 67.824 kb on - strand, within DVU0059at 67.824 kb on - strand, within DVU0059at 67.824 kb on - strand, within DVU0059at 67.824 kb on - strand, within DVU0059at 67.824 kb on - strand, within DVU0059at 67.912 kb on + strand, within DVU0059at 67.918 kb on + strand, within DVU0059at 67.936 kb on + strand, within DVU0059at 67.983 kb on + strand, within DVU0059at 67.996 kb on - strand, within DVU0059at 68.073 kb on - strand, within DVU0059at 68.122 kb on + strand, within DVU0059at 68.130 kb on - strand, within DVU0059at 68.154 kb on + strand, within DVU0059at 68.191 kb on - strand, within DVU0059at 68.233 kb on - strand, within DVU0059at 68.249 kb on - strand, within DVU0059at 68.288 kb on + strand, within DVU0059at 68.313 kb on + strand, within DVU0059at 68.377 kb on + strand, within DVU0059at 68.401 kb on + strand, within DVU0059at 68.435 kb on + strand, within DVU0059at 68.463 kb on - strand, within DVU0059at 68.473 kb on - strand, within DVU0059at 68.492 kb on - strand, within DVU0059at 68.642 kb on - strand, within DVU0059at 68.658 kb on + strand, within DVU0059at 68.666 kb on - strand, within DVU0059at 68.677 kb on - strand, within DVU0059at 68.703 kb on + strand, within DVU0059at 68.781 kb on + strand, within DVU0059at 68.781 kb on + strand, within DVU0059at 68.781 kb on + strand, within DVU0059at 68.781 kb on + strand, within DVU0059at 68.789 kb on - strand, within DVU0059at 68.789 kb on - strand, within DVU0059at 68.797 kb on - strand, within DVU0059at 68.831 kb on + strand, within DVU0059at 68.850 kb on + strand, within DVU0059at 68.881 kb on + strand, within DVU0059at 68.889 kb on + strand, within DVU0059at 68.916 kb on - strand, within DVU0059at 68.942 kb on + strand, within DVU0059at 69.149 kb on + strandat 69.167 kb on + strandat 69.211 kb on - strandat 69.253 kb on + strandat 69.261 kb on - strandat 69.266 kb on - strandat 69.275 kb on + strandat 69.282 kb on + strandat 69.282 kb on + strandat 69.283 kb on - strandat 69.285 kb on + strandat 69.290 kb on - strandat 69.290 kb on - strandat 69.292 kb on + strandat 69.374 kb on - strandat 69.399 kb on + strandat 69.595 kb on - strandat 69.617 kb on + strandat 69.625 kb on - strandat 69.647 kb on + strandat 69.673 kb on - strand, within acrAat 69.673 kb on - strand, within acrAat 69.701 kb on - strand, within acrAat 69.738 kb on + strand, within acrAat 69.787 kb on - strand, within acrAat 69.806 kb on - strand, within acrAat 69.850 kb on - strand, within acrAat 69.850 kb on - strand, within acrAat 69.863 kb on + strand, within acrAat 69.885 kb on + strand, within acrAat 69.958 kb on + strand, within acrAat 70.018 kb on - strand, within acrAat 70.020 kb on + strand, within acrAat 70.020 kb on + strand, within acrAat 70.028 kb on - strand, within acrAat 70.030 kb on + strand, within acrAat 70.204 kb on + strand, within acrAat 70.211 kb on + strand, within acrAat 70.214 kb on - strand, within acrAat 70.256 kb on - strand, within acrAat 70.302 kb on + strand, within acrAat 70.302 kb on + strand, within acrAat 70.310 kb on - strand, within acrAat 70.310 kb on - strand, within acrAat 70.310 kb on - strand, within acrAat 70.357 kb on + strand, within acrA

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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64,675 + DVU0058 0.13 +0.1
64,675 + DVU0058 0.13 -0.4
64,675 + DVU0058 0.13 +0.2
64,683 - DVU0058 0.14 +1.1
64,689 + DVU0058 0.14 -1.4
64,702 - DVU0058 0.15 -0.7
64,743 + DVU0058 0.19 -1.8
64,819 - DVU0058 0.25 -0.2
64,860 - DVU0058 0.29 -1.7
64,884 + DVU0058 0.31 -1.8
64,907 + DVU0058 0.33 +0.4
64,915 - DVU0058 0.34 -1.1
64,917 + DVU0058 0.34 -0.0
64,925 - DVU0058 0.35 -0.5
64,952 + DVU0058 0.37 -0.9
64,999 - DVU0058 0.41 -0.9
65,050 - DVU0058 0.45 -1.5
65,073 + DVU0058 0.47 -1.0
65,073 + DVU0058 0.47 -1.5
65,073 + DVU0058 0.47 -0.2
65,115 + DVU0058 0.51 +0.6
65,116 - DVU0058 0.51 -1.0
65,151 - DVU0058 0.54 -0.8
65,177 + DVU0058 0.56 -0.5
65,185 - DVU0058 0.57 +0.2
65,185 - DVU0058 0.57 +0.3
65,185 - DVU0058 0.57 -0.6
65,210 + DVU0058 0.59 -0.8
65,210 + DVU0058 0.59 -1.4
65,210 + DVU0058 0.59 -0.7
65,210 + DVU0058 0.59 +1.8
65,218 - DVU0058 0.60 +0.3
65,235 + DVU0058 0.61 -1.2
65,246 + DVU0058 0.62 -0.3
65,255 - DVU0058 0.63 -0.8
65,257 + DVU0058 0.63 -0.2
65,461 + DVU0058 0.81 -0.3
65,469 + DVU0058 0.82 -0.2
65,540 - DVU0058 0.88 +1.8
65,589 - +0.2
65,594 - -1.2
65,621 - -0.7
65,744 - -0.4
65,782 + -0.2
65,782 + -0.1
65,782 + -0.2
65,782 + -0.6
65,790 - -1.9
65,790 - -1.2
65,798 - -0.4
65,818 + -1.9
65,876 - -0.9
65,946 - +1.2
65,953 + -1.9
66,014 - -0.9
66,019 + +0.8
66,022 - -0.7
66,024 + -1.3
66,024 + -1.4
66,081 + DVU0059 0.11 +0.8
66,118 + DVU0059 0.12 -0.6
66,120 + DVU0059 0.12 +0.8
66,120 + DVU0059 0.12 -0.4
66,128 - DVU0059 0.12 +0.8
66,128 - DVU0059 0.12 -1.1
66,128 - DVU0059 0.12 -0.1
66,167 - DVU0059 0.13 -1.0
66,230 + DVU0059 0.15 +0.8
66,241 + DVU0059 0.15 +0.8
66,243 - DVU0059 0.15 -1.0
66,297 - DVU0059 0.17 -0.8
66,351 - DVU0059 0.18 -0.4
66,437 + DVU0059 0.21 -1.1
66,445 - DVU0059 0.21 -0.7
66,445 - DVU0059 0.21 -1.5
66,471 + DVU0059 0.21 -1.4
66,479 - DVU0059 0.22 +0.8
66,515 + DVU0059 0.23 -0.1
66,621 + DVU0059 0.25 +1.2
66,747 + DVU0059 0.29 -1.7
66,784 - DVU0059 0.30 +0.8
66,796 + DVU0059 0.30 -0.8
66,883 + DVU0059 0.33 +0.5
67,000 + DVU0059 0.36 -1.8
67,022 - DVU0059 0.36 -0.2
67,048 + DVU0059 0.37 -0.3
67,112 - DVU0059 0.39 -0.6
67,191 - DVU0059 0.41 +0.0
67,253 - DVU0059 0.43 -0.8
67,283 - DVU0059 0.43 -1.3
67,284 + DVU0059 0.43 -0.5
67,296 + DVU0059 0.44 +0.8
67,366 + DVU0059 0.46 -2.0
67,366 + DVU0059 0.46 -0.6
67,366 + DVU0059 0.46 -0.2
67,366 + DVU0059 0.46 -0.1
67,374 - DVU0059 0.46 +0.0
67,374 - DVU0059 0.46 -1.5
67,374 - DVU0059 0.46 +0.8
67,374 - DVU0059 0.46 -1.1
67,374 - DVU0059 0.46 +0.2
67,396 + DVU0059 0.46 +0.8
67,457 + DVU0059 0.48 -1.7
67,470 + DVU0059 0.48 -1.0
67,548 + DVU0059 0.50 -0.3
67,560 + DVU0059 0.51 -1.3
67,570 + DVU0059 0.51 -0.9
67,570 + DVU0059 0.51 -1.0
67,578 - DVU0059 0.51 -0.8
67,602 - DVU0059 0.52 -0.3
67,639 + DVU0059 0.53 -1.1
67,639 + DVU0059 0.53 +0.8
67,743 + DVU0059 0.56 -0.6
67,751 - DVU0059 0.56 +0.2
67,753 + DVU0059 0.56 +0.8
67,770 - DVU0059 0.56 -1.0
67,779 + DVU0059 0.57 -1.4
67,781 + DVU0059 0.57 -0.9
67,782 - DVU0059 0.57 +0.1
67,805 - DVU0059 0.57 -0.6
67,805 - DVU0059 0.57 -0.8
67,811 - DVU0059 0.58 -0.2
67,816 + DVU0059 0.58 -0.4
67,816 + DVU0059 0.58 +0.8
67,824 - DVU0059 0.58 -0.2
67,824 - DVU0059 0.58 +0.3
67,824 - DVU0059 0.58 -0.3
67,824 - DVU0059 0.58 +0.3
67,824 - DVU0059 0.58 -1.2
67,824 - DVU0059 0.58 -1.9
67,912 + DVU0059 0.60 +0.1
67,918 + DVU0059 0.60 -0.7
67,936 + DVU0059 0.61 -1.9
67,983 + DVU0059 0.62 -0.5
67,996 - DVU0059 0.63 +0.4
68,073 - DVU0059 0.65 -1.5
68,122 + DVU0059 0.66 -2.4
68,130 - DVU0059 0.66 -0.2
68,154 + DVU0059 0.67 -1.6
68,191 - DVU0059 0.68 -0.4
68,233 - DVU0059 0.69 -1.1
68,249 - DVU0059 0.69 -0.2
68,288 + DVU0059 0.70 +0.4
68,313 + DVU0059 0.71 -1.7
68,377 + DVU0059 0.73 -0.7
68,401 + DVU0059 0.73 -0.7
68,435 + DVU0059 0.74 +2.1
68,463 - DVU0059 0.75 -0.9
68,473 - DVU0059 0.75 -0.7
68,492 - DVU0059 0.76 -0.8
68,642 - DVU0059 0.80 -1.2
68,658 + DVU0059 0.80 +0.8
68,666 - DVU0059 0.81 -0.8
68,677 - DVU0059 0.81 -0.6
68,703 + DVU0059 0.82 +0.8
68,781 + DVU0059 0.84 -1.3
68,781 + DVU0059 0.84 -1.5
68,781 + DVU0059 0.84 -0.4
68,781 + DVU0059 0.84 -0.9
68,789 - DVU0059 0.84 -1.1
68,789 - DVU0059 0.84 -1.3
68,797 - DVU0059 0.84 -0.2
68,831 + DVU0059 0.85 +0.8
68,850 + DVU0059 0.86 +0.1
68,881 + DVU0059 0.86 +0.8
68,889 + DVU0059 0.87 -0.6
68,916 - DVU0059 0.87 -2.2
68,942 + DVU0059 0.88 +1.8
69,149 + -0.8
69,167 + -1.1
69,211 - -0.6
69,253 + +0.2
69,261 - -1.2
69,266 - -0.2
69,275 + +0.0
69,282 + -1.1
69,282 + +0.5
69,283 - -0.4
69,285 + +0.8
69,290 - +0.0
69,290 - -0.8
69,292 + -0.3
69,374 - -0.2
69,399 + +0.1
69,595 - -0.1
69,617 + +0.1
69,625 - +0.1
69,647 + +0.3
69,673 - acrA DVU0060 0.11 -0.2
69,673 - acrA DVU0060 0.11 -0.1
69,701 - acrA DVU0060 0.14 -1.2
69,738 + acrA DVU0060 0.17 +0.3
69,787 - acrA DVU0060 0.21 -0.2
69,806 - acrA DVU0060 0.22 -0.1
69,850 - acrA DVU0060 0.26 +0.5
69,850 - acrA DVU0060 0.26 -0.6
69,863 + acrA DVU0060 0.27 -0.2
69,885 + acrA DVU0060 0.29 -0.1
69,958 + acrA DVU0060 0.35 -0.5
70,018 - acrA DVU0060 0.40 -1.8
70,020 + acrA DVU0060 0.41 -0.7
70,020 + acrA DVU0060 0.41 -0.1
70,028 - acrA DVU0060 0.41 -0.6
70,030 + acrA DVU0060 0.41 +0.2
70,204 + acrA DVU0060 0.56 +3.4
70,211 + acrA DVU0060 0.57 +0.1
70,214 - acrA DVU0060 0.57 -0.6
70,256 - acrA DVU0060 0.60 -0.6
70,302 + acrA DVU0060 0.64 +0.8
70,302 + acrA DVU0060 0.64 -0.5
70,310 - acrA DVU0060 0.65 -0.3
70,310 - acrA DVU0060 0.65 +0.1
70,310 - acrA DVU0060 0.65 -0.3
70,357 + acrA DVU0060 0.69 -0.3

Or see this region's nucleotide sequence