Experiment: 4-Hydroxyacetophenone 0.00025 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_257 and Pf6N2E2_258 are separated by 145 nucleotides Pf6N2E2_258 and Pf6N2E2_259 are separated by 238 nucleotides
Pf6N2E2_257 - Exoenzymes regulatory protein AepA precursor, at 320,354 to 322,192
_257
Pf6N2E2_258 - Nicotinamidase family protein YcaC, at 322,338 to 322,967
_258
Pf6N2E2_259 - Transcriptional regulator, LysR family, at 323,206 to 324,084
_259
Position (kb) 322
323 Strain fitness (log2 ratio) -2
-1
0
1
2 at 321.383 kb on + strand, within Pf6N2E2_257 at 321.383 kb on + strand, within Pf6N2E2_257 at 321.384 kb on - strand, within Pf6N2E2_257 at 321.384 kb on - strand, within Pf6N2E2_257 at 321.384 kb on - strand, within Pf6N2E2_257 at 321.384 kb on - strand, within Pf6N2E2_257 at 321.384 kb on - strand, within Pf6N2E2_257 at 321.384 kb on - strand, within Pf6N2E2_257 at 321.579 kb on - strand, within Pf6N2E2_257 at 321.579 kb on - strand, within Pf6N2E2_257 at 321.677 kb on + strand, within Pf6N2E2_257 at 321.678 kb on - strand, within Pf6N2E2_257 at 321.678 kb on - strand, within Pf6N2E2_257 at 321.678 kb on - strand, within Pf6N2E2_257 at 321.699 kb on - strand, within Pf6N2E2_257 at 321.947 kb on + strand, within Pf6N2E2_257 at 321.948 kb on - strand, within Pf6N2E2_257 at 322.311 kb on + strand at 322.312 kb on - strand at 322.312 kb on - strand at 322.356 kb on + strand at 322.584 kb on + strand, within Pf6N2E2_258 at 322.584 kb on + strand, within Pf6N2E2_258 at 322.584 kb on + strand, within Pf6N2E2_258 at 322.584 kb on + strand, within Pf6N2E2_258 at 322.584 kb on + strand, within Pf6N2E2_258 at 322.584 kb on + strand, within Pf6N2E2_258 at 322.767 kb on - strand, within Pf6N2E2_258 at 322.944 kb on + strand at 322.944 kb on + strand at 322.945 kb on - strand at 322.945 kb on - strand at 322.965 kb on + strand at 322.966 kb on - strand at 322.966 kb on - strand at 322.966 kb on - strand at 322.966 kb on - strand at 323.026 kb on + strand at 323.027 kb on - strand at 323.027 kb on - strand at 323.047 kb on + strand at 323.194 kb on - strand at 323.194 kb on - strand at 323.620 kb on + strand, within Pf6N2E2_259 at 323.620 kb on + strand, within Pf6N2E2_259 at 323.620 kb on + strand, within Pf6N2E2_259 at 323.621 kb on - strand, within Pf6N2E2_259 at 323.698 kb on + strand, within Pf6N2E2_259 at 323.698 kb on + strand, within Pf6N2E2_259 at 323.699 kb on - strand, within Pf6N2E2_259 at 323.716 kb on + strand, within Pf6N2E2_259 at 323.914 kb on + strand, within Pf6N2E2_259 at 323.914 kb on + strand, within Pf6N2E2_259 at 323.914 kb on + strand, within Pf6N2E2_259 at 323.915 kb on - strand, within Pf6N2E2_259 at 323.915 kb on - strand, within Pf6N2E2_259 at 323.915 kb on - strand, within Pf6N2E2_259 at 323.915 kb on - strand, within Pf6N2E2_259 at 323.915 kb on - strand, within Pf6N2E2_259
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyacetophenone 0.00025 M remove 321,383 + Pf6N2E2_257 0.56 -1.4 321,383 + Pf6N2E2_257 0.56 +0.1 321,384 - Pf6N2E2_257 0.56 +1.2 321,384 - Pf6N2E2_257 0.56 -0.9 321,384 - Pf6N2E2_257 0.56 +0.9 321,384 - Pf6N2E2_257 0.56 +2.4 321,384 - Pf6N2E2_257 0.56 -0.0 321,384 - Pf6N2E2_257 0.56 +0.4 321,579 - Pf6N2E2_257 0.67 -0.3 321,579 - Pf6N2E2_257 0.67 +0.5 321,677 + Pf6N2E2_257 0.72 -0.3 321,678 - Pf6N2E2_257 0.72 +0.3 321,678 - Pf6N2E2_257 0.72 -0.6 321,678 - Pf6N2E2_257 0.72 -0.5 321,699 - Pf6N2E2_257 0.73 -0.6 321,947 + Pf6N2E2_257 0.87 +1.0 321,948 - Pf6N2E2_257 0.87 +0.3 322,311 + +1.7 322,312 - +0.7 322,312 - +0.7 322,356 + +1.6 322,584 + Pf6N2E2_258 0.39 -1.1 322,584 + Pf6N2E2_258 0.39 -0.3 322,584 + Pf6N2E2_258 0.39 -0.6 322,584 + Pf6N2E2_258 0.39 -2.1 322,584 + Pf6N2E2_258 0.39 -0.4 322,584 + Pf6N2E2_258 0.39 +1.0 322,767 - Pf6N2E2_258 0.68 +0.2 322,944 + +1.1 322,944 + -0.4 322,945 - -0.4 322,945 - +0.3 322,965 + -1.3 322,966 - -0.8 322,966 - +0.0 322,966 - +1.0 322,966 - -0.3 323,026 + -0.6 323,027 - +0.1 323,027 - -0.6 323,047 + +1.5 323,194 - -0.0 323,194 - -0.4 323,620 + Pf6N2E2_259 0.47 +0.7 323,620 + Pf6N2E2_259 0.47 -2.4 323,620 + Pf6N2E2_259 0.47 +0.4 323,621 - Pf6N2E2_259 0.47 +0.5 323,698 + Pf6N2E2_259 0.56 -0.1 323,698 + Pf6N2E2_259 0.56 +1.5 323,699 - Pf6N2E2_259 0.56 -0.3 323,716 + Pf6N2E2_259 0.58 -0.3 323,914 + Pf6N2E2_259 0.81 -0.6 323,914 + Pf6N2E2_259 0.81 -0.1 323,914 + Pf6N2E2_259 0.81 -0.5 323,915 - Pf6N2E2_259 0.81 -0.3 323,915 - Pf6N2E2_259 0.81 +0.4 323,915 - Pf6N2E2_259 0.81 +1.0 323,915 - Pf6N2E2_259 0.81 -1.3 323,915 - Pf6N2E2_259 0.81 -0.6
Or see this region's nucleotide sequence