Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04992 and H281DRAFT_04993 are separated by 301 nucleotides H281DRAFT_04993 and H281DRAFT_04994 are separated by 8 nucleotides H281DRAFT_04994 and H281DRAFT_04995 are separated by 166 nucleotides H281DRAFT_04995 and H281DRAFT_04996 are separated by 107 nucleotides
H281DRAFT_04992: H281DRAFT_04992 - hypothetical protein, at 178,268 to 179,230
_04992
H281DRAFT_04993: H281DRAFT_04993 - hypothetical protein, at 179,532 to 179,849
_04993
H281DRAFT_04994: H281DRAFT_04994 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 179,858 to 180,340
_04994
H281DRAFT_04995: H281DRAFT_04995 - type III secretion protein HrpB1, at 180,507 to 180,938
_04995
H281DRAFT_04996: H281DRAFT_04996 - type III secretion protein C, at 181,046 to 182,830
_04996
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1 at 179.203 kb on + strand at 179.204 kb on - strand at 179.216 kb on - strand at 179.296 kb on + strand at 179.408 kb on + strand at 179.680 kb on - strand, within H281DRAFT_04993 at 180.672 kb on - strand, within H281DRAFT_04995 at 180.672 kb on - strand, within H281DRAFT_04995 at 181.096 kb on + strand at 181.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 179,203 + -0.2 179,204 - -0.6 179,216 - +0.3 179,296 + -1.3 179,408 + -1.6 179,680 - H281DRAFT_04993 0.47 +0.1 180,672 - H281DRAFT_04995 0.38 -0.8 180,672 - H281DRAFT_04995 0.38 +1.1 181,096 + +0.3 181,097 - +0.5
Or see this region's nucleotide sequence