Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04708

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04706 and H281DRAFT_04707 overlap by 4 nucleotidesH281DRAFT_04707 and H281DRAFT_04708 overlap by 8 nucleotidesH281DRAFT_04708 and H281DRAFT_04709 are separated by 71 nucleotides H281DRAFT_04706: H281DRAFT_04706 - poly(A) polymerase, at 118,739 to 120,337 _04706 H281DRAFT_04707: H281DRAFT_04707 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 120,334 to 121,020 _04707 H281DRAFT_04708: H281DRAFT_04708 - regulatory inactivation of DnaA Hda protein, at 121,013 to 121,756 _04708 H281DRAFT_04709: H281DRAFT_04709 - Predicted PurR-regulated permease PerM, at 121,828 to 122,904 _04709 Position (kb) 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 120.035 kb on - strand, within H281DRAFT_04706at 120.035 kb on - strand, within H281DRAFT_04706at 120.116 kb on + strand, within H281DRAFT_04706at 120.116 kb on + strand, within H281DRAFT_04706at 120.312 kb on - strandat 120.317 kb on - strandat 120.473 kb on + strand, within H281DRAFT_04707at 120.551 kb on + strand, within H281DRAFT_04707at 120.779 kb on + strand, within H281DRAFT_04707at 120.779 kb on + strand, within H281DRAFT_04707at 120.780 kb on - strand, within H281DRAFT_04707at 120.780 kb on - strand, within H281DRAFT_04707at 120.848 kb on + strand, within H281DRAFT_04707at 120.879 kb on - strand, within H281DRAFT_04707at 120.887 kb on + strand, within H281DRAFT_04707at 120.887 kb on + strand, within H281DRAFT_04707at 120.887 kb on + strandat 120.930 kb on + strand, within H281DRAFT_04707at 121.029 kb on - strandat 121.029 kb on - strandat 121.760 kb on - strandat 121.760 kb on - strandat 121.839 kb on - strandat 121.857 kb on - strandat 122.049 kb on - strand, within H281DRAFT_04709at 122.142 kb on - strand, within H281DRAFT_04709at 122.252 kb on - strand, within H281DRAFT_04709at 122.252 kb on - strand, within H281DRAFT_04709at 122.382 kb on - strand, within H281DRAFT_04709at 122.390 kb on - strand, within H281DRAFT_04709at 122.390 kb on - strand, within H281DRAFT_04709at 122.466 kb on - strand, within H281DRAFT_04709at 122.519 kb on - strand, within H281DRAFT_04709

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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120,035 - H281DRAFT_04706 0.81 +0.5
120,035 - H281DRAFT_04706 0.81 -0.6
120,116 + H281DRAFT_04706 0.86 -0.0
120,116 + H281DRAFT_04706 0.86 +0.1
120,312 - -0.1
120,317 - -0.8
120,473 + H281DRAFT_04707 0.20 -2.2
120,551 + H281DRAFT_04707 0.32 -0.5
120,779 + H281DRAFT_04707 0.65 -0.3
120,779 + H281DRAFT_04707 0.65 -1.8
120,780 - H281DRAFT_04707 0.65 -1.6
120,780 - H281DRAFT_04707 0.65 -1.5
120,848 + H281DRAFT_04707 0.75 -1.6
120,879 - H281DRAFT_04707 0.79 -3.4
120,887 + H281DRAFT_04707 0.80 -2.2
120,887 + H281DRAFT_04707 0.80 -2.3
120,887 + +0.5
120,930 + H281DRAFT_04707 0.87 -1.7
121,029 - -0.3
121,029 - -0.2
121,760 - +1.6
121,760 - -0.1
121,839 - -0.0
121,857 - -0.0
122,049 - H281DRAFT_04709 0.21 -0.3
122,142 - H281DRAFT_04709 0.29 -0.4
122,252 - H281DRAFT_04709 0.39 -0.4
122,252 - H281DRAFT_04709 0.39 -0.4
122,382 - H281DRAFT_04709 0.51 -0.2
122,390 - H281DRAFT_04709 0.52 -2.3
122,390 - H281DRAFT_04709 0.52 +0.2
122,466 - H281DRAFT_04709 0.59 +0.5
122,519 - H281DRAFT_04709 0.64 +0.4

Or see this region's nucleotide sequence