Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07510

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07480 and PGA1_c07490 overlap by 1 nucleotidesPGA1_c07490 and PGA1_c07500 are separated by 98 nucleotidesPGA1_c07500 and PGA1_c07510 are separated by 41 nucleotidesPGA1_c07510 and PGA1_c07520 are separated by 31 nucleotidesPGA1_c07520 and PGA1_c07530 are separated by 64 nucleotides PGA1_c07480: PGA1_c07480 - Lysophospholipase, at 772,837 to 773,799 _c07480 PGA1_c07490: PGA1_c07490 - Putative sterol carrier protein, at 773,799 to 774,086 _c07490 PGA1_c07500: PGA1_c07500 - hypothetical protein, at 774,185 to 774,754 _c07500 PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813 _c07510 PGA1_c07520: PGA1_c07520 - putative heat shock protein, at 777,845 to 778,210 _c07520 PGA1_c07530: PGA1_c07530 - ferredoxin FdxA, at 778,275 to 778,613 _c07530 Position (kb) 774 775 776 777 778Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 773.797 kb on + strandat 773.805 kb on - strandat 773.817 kb on - strandat 773.913 kb on + strand, within PGA1_c07490at 774.002 kb on - strand, within PGA1_c07490at 774.069 kb on + strandat 774.086 kb on + strandat 774.107 kb on - strandat 774.166 kb on + strandat 774.172 kb on + strandat 774.172 kb on + strandat 774.174 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.180 kb on - strandat 774.213 kb on - strandat 774.229 kb on + strandat 774.229 kb on + strandat 774.237 kb on - strandat 774.247 kb on - strand, within PGA1_c07500at 774.247 kb on - strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.310 kb on + strand, within PGA1_c07500at 774.311 kb on + strand, within PGA1_c07500at 774.318 kb on - strand, within PGA1_c07500at 774.318 kb on - strand, within PGA1_c07500at 774.338 kb on + strand, within PGA1_c07500at 774.338 kb on + strand, within PGA1_c07500at 774.341 kb on - strand, within PGA1_c07500at 774.343 kb on + strand, within PGA1_c07500at 774.356 kb on - strand, within PGA1_c07500at 774.356 kb on - strand, within PGA1_c07500at 774.362 kb on + strand, within PGA1_c07500at 774.370 kb on - strand, within PGA1_c07500at 774.373 kb on + strand, within PGA1_c07500at 774.420 kb on + strand, within PGA1_c07500at 774.462 kb on - strand, within PGA1_c07500at 774.502 kb on + strand, within PGA1_c07500at 774.502 kb on + strand, within PGA1_c07500at 774.577 kb on + strand, within PGA1_c07500at 774.585 kb on - strand, within PGA1_c07500at 774.631 kb on + strand, within PGA1_c07500at 774.631 kb on + strand, within PGA1_c07500at 774.639 kb on - strand, within PGA1_c07500at 774.661 kb on - strand, within PGA1_c07500at 774.669 kb on - strand, within PGA1_c07500at 774.676 kb on + strand, within PGA1_c07500at 774.684 kb on - strand, within PGA1_c07500at 774.727 kb on + strandat 774.742 kb on - strandat 774.742 kb on - strandat 774.749 kb on + strandat 774.781 kb on - strandat 774.828 kb on + strandat 774.831 kb on - strandat 774.837 kb on - strandat 774.849 kb on + strandat 774.897 kb on + strandat 774.956 kb on - strandat 774.979 kb on - strandat 775.020 kb on - strandat 775.037 kb on - strandat 775.045 kb on + strandat 775.045 kb on + strandat 775.064 kb on - strandat 775.098 kb on - strand, within PGA1_c07510at 775.114 kb on - strand, within PGA1_c07510at 775.114 kb on - strand, within PGA1_c07510at 775.114 kb on - strand, within PGA1_c07510at 775.119 kb on - strand, within PGA1_c07510at 775.146 kb on + strand, within PGA1_c07510at 775.218 kb on + strand, within PGA1_c07510at 775.226 kb on - strand, within PGA1_c07510at 775.226 kb on - strand, within PGA1_c07510at 775.254 kb on + strand, within PGA1_c07510at 775.258 kb on + strand, within PGA1_c07510at 775.271 kb on - strand, within PGA1_c07510at 775.282 kb on - strand, within PGA1_c07510at 775.346 kb on + strand, within PGA1_c07510at 775.386 kb on + strand, within PGA1_c07510at 775.386 kb on + strand, within PGA1_c07510at 775.386 kb on + strand, within PGA1_c07510at 775.394 kb on - strand, within PGA1_c07510at 775.433 kb on - strand, within PGA1_c07510at 775.457 kb on + strand, within PGA1_c07510at 775.499 kb on + strand, within PGA1_c07510at 775.513 kb on + strand, within PGA1_c07510at 775.527 kb on + strand, within PGA1_c07510at 775.627 kb on - strand, within PGA1_c07510at 775.670 kb on + strand, within PGA1_c07510at 775.718 kb on + strand, within PGA1_c07510at 775.741 kb on + strand, within PGA1_c07510at 775.875 kb on - strand, within PGA1_c07510at 775.875 kb on - strand, within PGA1_c07510at 775.875 kb on - strand, within PGA1_c07510at 775.890 kb on + strand, within PGA1_c07510at 775.890 kb on + strand, within PGA1_c07510at 775.890 kb on + strand, within PGA1_c07510at 775.898 kb on - strand, within PGA1_c07510at 775.933 kb on - strand, within PGA1_c07510at 775.982 kb on + strand, within PGA1_c07510at 775.982 kb on + strand, within PGA1_c07510at 775.982 kb on + strand, within PGA1_c07510at 775.982 kb on + strand, within PGA1_c07510at 775.990 kb on - strand, within PGA1_c07510at 775.990 kb on - strand, within PGA1_c07510at 775.990 kb on - strand, within PGA1_c07510at 775.990 kb on - strand, within PGA1_c07510at 775.990 kb on - strand, within PGA1_c07510at 775.990 kb on - strand, within PGA1_c07510at 776.031 kb on + strand, within PGA1_c07510at 776.048 kb on + strand, within PGA1_c07510at 776.061 kb on + strand, within PGA1_c07510at 776.069 kb on - strand, within PGA1_c07510at 776.076 kb on - strand, within PGA1_c07510at 776.090 kb on + strand, within PGA1_c07510at 776.096 kb on + strand, within PGA1_c07510at 776.101 kb on + strand, within PGA1_c07510at 776.156 kb on - strand, within PGA1_c07510at 776.158 kb on + strand, within PGA1_c07510at 776.158 kb on + strand, within PGA1_c07510at 776.158 kb on + strand, within PGA1_c07510at 776.166 kb on - strand, within PGA1_c07510at 776.172 kb on + strand, within PGA1_c07510at 776.180 kb on - strand, within PGA1_c07510at 776.188 kb on - strand, within PGA1_c07510at 776.190 kb on + strand, within PGA1_c07510at 776.191 kb on + strand, within PGA1_c07510at 776.225 kb on - strand, within PGA1_c07510at 776.258 kb on - strand, within PGA1_c07510at 776.268 kb on - strand, within PGA1_c07510at 776.290 kb on - strand, within PGA1_c07510at 776.291 kb on - strand, within PGA1_c07510at 776.292 kb on - strand, within PGA1_c07510at 776.292 kb on - strand, within PGA1_c07510at 776.336 kb on - strand, within PGA1_c07510at 776.391 kb on + strand, within PGA1_c07510at 776.399 kb on - strand, within PGA1_c07510at 776.418 kb on + strand, within PGA1_c07510at 776.470 kb on + strand, within PGA1_c07510at 776.484 kb on + strand, within PGA1_c07510at 776.484 kb on + strand, within PGA1_c07510at 776.492 kb on - strand, within PGA1_c07510at 776.492 kb on - strand, within PGA1_c07510at 776.492 kb on - strand, within PGA1_c07510at 776.492 kb on - strand, within PGA1_c07510at 776.522 kb on + strand, within PGA1_c07510at 776.522 kb on + strand, within PGA1_c07510at 776.522 kb on + strand, within PGA1_c07510at 776.527 kb on + strand, within PGA1_c07510at 776.652 kb on + strand, within PGA1_c07510at 776.687 kb on - strand, within PGA1_c07510at 776.691 kb on - strand, within PGA1_c07510at 776.691 kb on - strand, within PGA1_c07510at 776.698 kb on - strand, within PGA1_c07510at 776.728 kb on - strand, within PGA1_c07510at 776.810 kb on + strand, within PGA1_c07510at 776.862 kb on - strand, within PGA1_c07510at 776.896 kb on + strand, within PGA1_c07510at 777.007 kb on + strand, within PGA1_c07510at 777.007 kb on + strand, within PGA1_c07510at 777.153 kb on - strand, within PGA1_c07510at 777.267 kb on + strand, within PGA1_c07510at 777.270 kb on - strand, within PGA1_c07510at 777.304 kb on + strand, within PGA1_c07510at 777.310 kb on - strand, within PGA1_c07510at 777.521 kb on - strandat 777.528 kb on - strandat 777.544 kb on - strandat 777.608 kb on - strandat 777.714 kb on - strandat 777.717 kb on - strandat 777.720 kb on + strandat 777.720 kb on + strandat 777.768 kb on - strandat 777.792 kb on - strandat 777.796 kb on - strandat 777.900 kb on + strand, within PGA1_c07520at 777.900 kb on + strand, within PGA1_c07520at 777.900 kb on - strand, within PGA1_c07520at 777.922 kb on + strand, within PGA1_c07520at 777.930 kb on - strand, within PGA1_c07520at 778.057 kb on + strand, within PGA1_c07520at 778.060 kb on - strand, within PGA1_c07520at 778.150 kb on - strand, within PGA1_c07520at 778.184 kb on - strandat 778.633 kb on - strandat 778.650 kb on - strandat 778.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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773,797 + -0.4
773,805 - +0.1
773,817 - +0.6
773,913 + PGA1_c07490 0.40 +3.5
774,002 - PGA1_c07490 0.70 +3.5
774,069 + +2.7
774,086 + +1.7
774,107 - -1.0
774,166 + +2.0
774,172 + +1.0
774,172 + +0.9
774,174 - +1.0
774,180 - +0.4
774,180 - +0.8
774,180 - +0.7
774,180 - -1.2
774,213 - +0.3
774,229 + +0.1
774,229 + +0.3
774,237 - +0.1
774,247 - PGA1_c07500 0.11 +0.4
774,247 - PGA1_c07500 0.11 -1.4
774,310 + PGA1_c07500 0.22 +0.9
774,310 + PGA1_c07500 0.22 -0.3
774,310 + PGA1_c07500 0.22 -0.8
774,311 + PGA1_c07500 0.22 +0.1
774,318 - PGA1_c07500 0.23 -0.9
774,318 - PGA1_c07500 0.23 +0.2
774,338 + PGA1_c07500 0.27 +0.6
774,338 + PGA1_c07500 0.27 +1.1
774,341 - PGA1_c07500 0.27 +0.8
774,343 + PGA1_c07500 0.28 -0.7
774,356 - PGA1_c07500 0.30 +1.2
774,356 - PGA1_c07500 0.30 -0.1
774,362 + PGA1_c07500 0.31 +0.0
774,370 - PGA1_c07500 0.32 -0.1
774,373 + PGA1_c07500 0.33 +0.2
774,420 + PGA1_c07500 0.41 -1.6
774,462 - PGA1_c07500 0.49 -0.6
774,502 + PGA1_c07500 0.56 -0.4
774,502 + PGA1_c07500 0.56 +0.7
774,577 + PGA1_c07500 0.69 -1.2
774,585 - PGA1_c07500 0.70 -0.9
774,631 + PGA1_c07500 0.78 +0.6
774,631 + PGA1_c07500 0.78 +0.1
774,639 - PGA1_c07500 0.80 -0.4
774,661 - PGA1_c07500 0.84 -0.5
774,669 - PGA1_c07500 0.85 +0.3
774,676 + PGA1_c07500 0.86 +0.4
774,684 - PGA1_c07500 0.88 +0.6
774,727 + -0.4
774,742 - -0.3
774,742 - -0.3
774,749 + -0.0
774,781 - -0.4
774,828 + -0.1
774,831 - +1.0
774,837 - -0.3
774,849 + -0.9
774,897 + -0.0
774,956 - +0.2
774,979 - +0.2
775,020 - -2.7
775,037 - -0.7
775,045 + -0.2
775,045 + +1.1
775,064 - -1.7
775,098 - PGA1_c07510 0.10 +0.1
775,114 - PGA1_c07510 0.11 +0.3
775,114 - PGA1_c07510 0.11 +0.4
775,114 - PGA1_c07510 0.11 -0.1
775,119 - PGA1_c07510 0.11 -0.6
775,146 + PGA1_c07510 0.12 +0.6
775,218 + PGA1_c07510 0.14 -0.2
775,226 - PGA1_c07510 0.14 -0.4
775,226 - PGA1_c07510 0.14 +1.9
775,254 + PGA1_c07510 0.15 +0.1
775,258 + PGA1_c07510 0.15 -0.7
775,271 - PGA1_c07510 0.16 -0.1
775,282 - PGA1_c07510 0.16 +0.6
775,346 + PGA1_c07510 0.18 -0.8
775,386 + PGA1_c07510 0.20 -0.3
775,386 + PGA1_c07510 0.20 +0.3
775,386 + PGA1_c07510 0.20 +2.0
775,394 - PGA1_c07510 0.20 +0.5
775,433 - PGA1_c07510 0.21 +0.6
775,457 + PGA1_c07510 0.22 -0.7
775,499 + PGA1_c07510 0.23 -1.3
775,513 + PGA1_c07510 0.24 +0.8
775,527 + PGA1_c07510 0.24 +0.8
775,627 - PGA1_c07510 0.28 +0.1
775,670 + PGA1_c07510 0.29 -2.0
775,718 + PGA1_c07510 0.31 -0.4
775,741 + PGA1_c07510 0.31 -0.0
775,875 - PGA1_c07510 0.36 -1.1
775,875 - PGA1_c07510 0.36 -0.6
775,875 - PGA1_c07510 0.36 -0.4
775,890 + PGA1_c07510 0.36 +1.3
775,890 + PGA1_c07510 0.36 +0.5
775,890 + PGA1_c07510 0.36 -0.1
775,898 - PGA1_c07510 0.37 -0.2
775,933 - PGA1_c07510 0.38 -1.7
775,982 + PGA1_c07510 0.39 -0.0
775,982 + PGA1_c07510 0.39 -0.1
775,982 + PGA1_c07510 0.39 +1.3
775,982 + PGA1_c07510 0.39 +0.7
775,990 - PGA1_c07510 0.40 -0.9
775,990 - PGA1_c07510 0.40 -1.6
775,990 - PGA1_c07510 0.40 -0.0
775,990 - PGA1_c07510 0.40 +0.4
775,990 - PGA1_c07510 0.40 +0.3
775,990 - PGA1_c07510 0.40 -0.1
776,031 + PGA1_c07510 0.41 -1.2
776,048 + PGA1_c07510 0.41 -0.1
776,061 + PGA1_c07510 0.42 -0.9
776,069 - PGA1_c07510 0.42 +1.0
776,076 - PGA1_c07510 0.42 +0.4
776,090 + PGA1_c07510 0.43 -1.6
776,096 + PGA1_c07510 0.43 +0.8
776,101 + PGA1_c07510 0.43 +0.6
776,156 - PGA1_c07510 0.45 -3.3
776,158 + PGA1_c07510 0.45 +0.6
776,158 + PGA1_c07510 0.45 -0.7
776,158 + PGA1_c07510 0.45 -0.2
776,166 - PGA1_c07510 0.45 +1.6
776,172 + PGA1_c07510 0.46 -3.1
776,180 - PGA1_c07510 0.46 -2.9
776,188 - PGA1_c07510 0.46 -2.2
776,190 + PGA1_c07510 0.46 -1.7
776,191 + PGA1_c07510 0.46 -2.4
776,225 - PGA1_c07510 0.47 -1.7
776,258 - PGA1_c07510 0.48 -2.1
776,268 - PGA1_c07510 0.49 -1.7
776,290 - PGA1_c07510 0.50 -0.6
776,291 - PGA1_c07510 0.50 -0.4
776,292 - PGA1_c07510 0.50 -0.4
776,292 - PGA1_c07510 0.50 -1.4
776,336 - PGA1_c07510 0.51 -2.4
776,391 + PGA1_c07510 0.53 -2.6
776,399 - PGA1_c07510 0.53 -2.2
776,418 + PGA1_c07510 0.54 -2.4
776,470 + PGA1_c07510 0.55 -3.0
776,484 + PGA1_c07510 0.56 -2.7
776,484 + PGA1_c07510 0.56 -2.4
776,492 - PGA1_c07510 0.56 -1.7
776,492 - PGA1_c07510 0.56 -1.7
776,492 - PGA1_c07510 0.56 -3.2
776,492 - PGA1_c07510 0.56 -0.6
776,522 + PGA1_c07510 0.57 -4.1
776,522 + PGA1_c07510 0.57 -3.4
776,522 + PGA1_c07510 0.57 -4.5
776,527 + PGA1_c07510 0.57 -2.9
776,652 + PGA1_c07510 0.61 -2.9
776,687 - PGA1_c07510 0.63 -1.0
776,691 - PGA1_c07510 0.63 -0.4
776,691 - PGA1_c07510 0.63 -0.9
776,698 - PGA1_c07510 0.63 -1.2
776,728 - PGA1_c07510 0.64 -0.7
776,810 + PGA1_c07510 0.67 -3.6
776,862 - PGA1_c07510 0.68 -1.4
776,896 + PGA1_c07510 0.70 +0.6
777,007 + PGA1_c07510 0.73 -2.9
777,007 + PGA1_c07510 0.73 -3.1
777,153 - PGA1_c07510 0.78 -1.7
777,267 + PGA1_c07510 0.82 -0.7
777,270 - PGA1_c07510 0.82 -2.0
777,304 + PGA1_c07510 0.83 -3.1
777,310 - PGA1_c07510 0.83 -2.6
777,521 - -1.2
777,528 - -1.7
777,544 - -1.2
777,608 - -1.4
777,714 - -3.1
777,717 - -2.6
777,720 + -3.1
777,720 + -0.4
777,768 - -2.1
777,792 - -1.9
777,796 - -2.6
777,900 + PGA1_c07520 0.15 -0.5
777,900 + PGA1_c07520 0.15 -1.7
777,900 - PGA1_c07520 0.15 -0.5
777,922 + PGA1_c07520 0.21 -0.6
777,930 - PGA1_c07520 0.23 -0.0
778,057 + PGA1_c07520 0.58 -0.4
778,060 - PGA1_c07520 0.59 -0.5
778,150 - PGA1_c07520 0.83 -0.2
778,184 - +0.4
778,633 - +0.9
778,650 - +0.2
778,738 + -0.1

Or see this region's nucleotide sequence