Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01860

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01840 and PGA1_262p01850 are separated by 79 nucleotidesPGA1_262p01850 and PGA1_262p01860 are separated by 55 nucleotidesPGA1_262p01860 and PGA1_262p01870 are separated by 102 nucleotides PGA1_262p01840: PGA1_262p01840 - ATP-dependent AMP binding enzyme, at 202,560 to 204,191 _262p01840 PGA1_262p01850: PGA1_262p01850 - putative enoyl-CoA hydratase, at 204,271 to 205,077 _262p01850 PGA1_262p01860: PGA1_262p01860 - putative acyl-Co-A dehydrogenase, at 205,133 to 206,911 _262p01860 PGA1_262p01870: PGA1_262p01870 - putative transcriptional regulator, AraC family, at 207,014 to 208,033 _262p01870 Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 204.133 kb on + strandat 204.143 kb on + strandat 204.143 kb on + strandat 204.151 kb on - strandat 204.225 kb on + strandat 204.277 kb on + strandat 204.321 kb on - strandat 204.333 kb on - strandat 204.456 kb on + strand, within PGA1_262p01850at 204.459 kb on - strand, within PGA1_262p01850at 204.464 kb on - strand, within PGA1_262p01850at 204.464 kb on - strand, within PGA1_262p01850at 204.521 kb on + strand, within PGA1_262p01850at 204.627 kb on - strand, within PGA1_262p01850at 204.778 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.811 kb on - strand, within PGA1_262p01850at 204.822 kb on + strand, within PGA1_262p01850at 204.827 kb on + strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.839 kb on + strand, within PGA1_262p01850at 204.845 kb on - strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.922 kb on - strand, within PGA1_262p01850at 204.922 kb on - strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.937 kb on - strand, within PGA1_262p01850at 204.937 kb on - strand, within PGA1_262p01850at 204.959 kb on - strand, within PGA1_262p01850at 205.029 kb on + strandat 205.029 kb on + strandat 205.029 kb on + strandat 205.042 kb on + strandat 205.046 kb on + strandat 205.053 kb on + strandat 205.054 kb on - strandat 205.096 kb on + strandat 205.145 kb on - strandat 205.162 kb on + strandat 205.170 kb on - strandat 205.209 kb on + strandat 205.211 kb on + strandat 205.219 kb on - strandat 205.219 kb on - strandat 205.288 kb on + strandat 205.300 kb on + strandat 205.385 kb on - strand, within PGA1_262p01860at 205.406 kb on - strand, within PGA1_262p01860at 205.420 kb on - strand, within PGA1_262p01860at 205.431 kb on - strand, within PGA1_262p01860at 205.434 kb on + strand, within PGA1_262p01860at 205.434 kb on + strand, within PGA1_262p01860at 205.565 kb on + strand, within PGA1_262p01860at 205.573 kb on - strand, within PGA1_262p01860at 205.634 kb on + strand, within PGA1_262p01860at 205.634 kb on + strand, within PGA1_262p01860at 205.679 kb on + strand, within PGA1_262p01860at 205.734 kb on + strand, within PGA1_262p01860at 205.736 kb on - strand, within PGA1_262p01860at 205.769 kb on - strand, within PGA1_262p01860at 205.769 kb on - strand, within PGA1_262p01860at 205.782 kb on + strand, within PGA1_262p01860at 205.792 kb on + strand, within PGA1_262p01860at 205.800 kb on - strand, within PGA1_262p01860at 205.800 kb on - strand, within PGA1_262p01860at 205.822 kb on + strand, within PGA1_262p01860at 205.833 kb on + strand, within PGA1_262p01860at 205.913 kb on + strand, within PGA1_262p01860at 205.931 kb on + strand, within PGA1_262p01860at 206.001 kb on - strand, within PGA1_262p01860at 206.001 kb on - strand, within PGA1_262p01860at 206.122 kb on - strand, within PGA1_262p01860at 206.183 kb on + strand, within PGA1_262p01860at 206.188 kb on + strand, within PGA1_262p01860at 206.216 kb on + strand, within PGA1_262p01860at 206.223 kb on - strand, within PGA1_262p01860at 206.224 kb on - strand, within PGA1_262p01860at 206.224 kb on - strand, within PGA1_262p01860at 206.225 kb on + strand, within PGA1_262p01860at 206.233 kb on + strand, within PGA1_262p01860at 206.233 kb on - strand, within PGA1_262p01860at 206.233 kb on - strand, within PGA1_262p01860at 206.359 kb on - strand, within PGA1_262p01860at 206.375 kb on + strand, within PGA1_262p01860at 206.381 kb on - strand, within PGA1_262p01860at 206.516 kb on - strand, within PGA1_262p01860at 206.524 kb on + strand, within PGA1_262p01860at 206.532 kb on - strand, within PGA1_262p01860at 206.532 kb on - strand, within PGA1_262p01860at 206.591 kb on + strand, within PGA1_262p01860at 206.618 kb on - strand, within PGA1_262p01860at 206.647 kb on + strand, within PGA1_262p01860at 206.649 kb on + strand, within PGA1_262p01860at 206.649 kb on + strand, within PGA1_262p01860at 206.649 kb on + strand, within PGA1_262p01860at 206.657 kb on - strand, within PGA1_262p01860at 206.657 kb on - strand, within PGA1_262p01860at 206.659 kb on + strand, within PGA1_262p01860at 206.667 kb on - strand, within PGA1_262p01860at 206.683 kb on + strand, within PGA1_262p01860at 206.683 kb on + strand, within PGA1_262p01860at 206.691 kb on - strand, within PGA1_262p01860at 206.748 kb on + strandat 206.802 kb on - strandat 206.820 kb on + strandat 206.820 kb on + strandat 206.828 kb on - strandat 206.881 kb on - strandat 206.888 kb on + strandat 206.896 kb on - strandat 207.026 kb on + strandat 207.039 kb on + strandat 207.052 kb on - strandat 207.252 kb on - strand, within PGA1_262p01870at 207.420 kb on + strand, within PGA1_262p01870at 207.486 kb on + strand, within PGA1_262p01870at 207.521 kb on + strand, within PGA1_262p01870at 207.553 kb on + strand, within PGA1_262p01870at 207.553 kb on + strand, within PGA1_262p01870at 207.561 kb on - strand, within PGA1_262p01870at 207.654 kb on + strand, within PGA1_262p01870at 207.654 kb on + strand, within PGA1_262p01870at 207.686 kb on + strand, within PGA1_262p01870at 207.694 kb on - strand, within PGA1_262p01870at 207.711 kb on + strand, within PGA1_262p01870at 207.716 kb on - strand, within PGA1_262p01870at 207.719 kb on - strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.721 kb on + strand, within PGA1_262p01870at 207.729 kb on - strand, within PGA1_262p01870at 207.771 kb on + strand, within PGA1_262p01870at 207.798 kb on + strand, within PGA1_262p01870at 207.799 kb on - strand, within PGA1_262p01870at 207.804 kb on + strand, within PGA1_262p01870at 207.806 kb on - strand, within PGA1_262p01870at 207.809 kb on + strand, within PGA1_262p01870at 207.849 kb on + strand, within PGA1_262p01870at 207.857 kb on - strand, within PGA1_262p01870at 207.872 kb on + strand, within PGA1_262p01870at 207.875 kb on - strand, within PGA1_262p01870at 207.880 kb on - strand, within PGA1_262p01870at 207.910 kb on - strand, within PGA1_262p01870

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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204,133 + -0.3
204,143 + -0.4
204,143 + +0.5
204,151 - -1.4
204,225 + +0.8
204,277 + +0.7
204,321 - +0.6
204,333 - -1.2
204,456 + PGA1_262p01850 0.23 +0.6
204,459 - PGA1_262p01850 0.23 -1.2
204,464 - PGA1_262p01850 0.24 -0.4
204,464 - PGA1_262p01850 0.24 +1.2
204,521 + PGA1_262p01850 0.31 +1.4
204,627 - PGA1_262p01850 0.44 -0.0
204,778 - PGA1_262p01850 0.63 -0.3
204,797 - PGA1_262p01850 0.65 +1.6
204,797 - PGA1_262p01850 0.65 +0.0
204,797 - PGA1_262p01850 0.65 -0.1
204,797 - PGA1_262p01850 0.65 -1.3
204,797 - PGA1_262p01850 0.65 +0.2
204,811 - PGA1_262p01850 0.67 +0.2
204,822 + PGA1_262p01850 0.68 +0.0
204,827 + PGA1_262p01850 0.69 +0.4
204,830 - PGA1_262p01850 0.69 -1.1
204,830 - PGA1_262p01850 0.69 +0.2
204,830 - PGA1_262p01850 0.69 -0.7
204,839 + PGA1_262p01850 0.70 -0.3
204,845 - PGA1_262p01850 0.71 -2.0
204,858 + PGA1_262p01850 0.73 -0.6
204,858 + PGA1_262p01850 0.73 +0.7
204,858 + PGA1_262p01850 0.73 +0.5
204,858 + PGA1_262p01850 0.73 +0.6
204,858 + PGA1_262p01850 0.73 -0.7
204,858 + PGA1_262p01850 0.73 -1.2
204,866 - PGA1_262p01850 0.74 -0.7
204,866 - PGA1_262p01850 0.74 -1.4
204,866 - PGA1_262p01850 0.74 -1.4
204,914 + PGA1_262p01850 0.80 -0.8
204,914 + PGA1_262p01850 0.80 -0.1
204,914 + PGA1_262p01850 0.80 -1.4
204,914 + PGA1_262p01850 0.80 -0.3
204,914 + PGA1_262p01850 0.80 +0.6
204,914 + PGA1_262p01850 0.80 -0.1
204,914 + PGA1_262p01850 0.80 -0.1
204,922 - PGA1_262p01850 0.81 -0.4
204,922 - PGA1_262p01850 0.81 +0.9
204,929 + PGA1_262p01850 0.82 +0.3
204,929 + PGA1_262p01850 0.82 +0.6
204,929 + PGA1_262p01850 0.82 +1.0
204,929 + PGA1_262p01850 0.82 +0.1
204,937 - PGA1_262p01850 0.83 +0.2
204,937 - PGA1_262p01850 0.83 -0.4
204,959 - PGA1_262p01850 0.85 +0.3
205,029 + +0.2
205,029 + -0.5
205,029 + -0.1
205,042 + -0.4
205,046 + +0.6
205,053 + -0.4
205,054 - -2.3
205,096 + -0.7
205,145 - -0.4
205,162 + +1.3
205,170 - -0.8
205,209 + +0.3
205,211 + -0.0
205,219 - -0.4
205,219 - -1.4
205,288 + +0.2
205,300 + -0.4
205,385 - PGA1_262p01860 0.14 +0.2
205,406 - PGA1_262p01860 0.15 -0.3
205,420 - PGA1_262p01860 0.16 -0.8
205,431 - PGA1_262p01860 0.17 -0.8
205,434 + PGA1_262p01860 0.17 +0.2
205,434 + PGA1_262p01860 0.17 +1.2
205,565 + PGA1_262p01860 0.24 -0.4
205,573 - PGA1_262p01860 0.25 +0.8
205,634 + PGA1_262p01860 0.28 -0.6
205,634 + PGA1_262p01860 0.28 +0.6
205,679 + PGA1_262p01860 0.31 -1.2
205,734 + PGA1_262p01860 0.34 +0.6
205,736 - PGA1_262p01860 0.34 -1.1
205,769 - PGA1_262p01860 0.36 -0.6
205,769 - PGA1_262p01860 0.36 -1.1
205,782 + PGA1_262p01860 0.36 -0.8
205,792 + PGA1_262p01860 0.37 -0.4
205,800 - PGA1_262p01860 0.37 -0.7
205,800 - PGA1_262p01860 0.37 -1.2
205,822 + PGA1_262p01860 0.39 +1.4
205,833 + PGA1_262p01860 0.39 -0.3
205,913 + PGA1_262p01860 0.44 -0.7
205,931 + PGA1_262p01860 0.45 -0.4
206,001 - PGA1_262p01860 0.49 -0.1
206,001 - PGA1_262p01860 0.49 -0.4
206,122 - PGA1_262p01860 0.56 -0.9
206,183 + PGA1_262p01860 0.59 +0.2
206,188 + PGA1_262p01860 0.59 -0.3
206,216 + PGA1_262p01860 0.61 -0.6
206,223 - PGA1_262p01860 0.61 +1.2
206,224 - PGA1_262p01860 0.61 +0.7
206,224 - PGA1_262p01860 0.61 -1.4
206,225 + PGA1_262p01860 0.61 -1.0
206,233 + PGA1_262p01860 0.62 -0.0
206,233 - PGA1_262p01860 0.62 -0.6
206,233 - PGA1_262p01860 0.62 -0.2
206,359 - PGA1_262p01860 0.69 -0.4
206,375 + PGA1_262p01860 0.70 -0.5
206,381 - PGA1_262p01860 0.70 -0.8
206,516 - PGA1_262p01860 0.78 +0.7
206,524 + PGA1_262p01860 0.78 -2.0
206,532 - PGA1_262p01860 0.79 -0.1
206,532 - PGA1_262p01860 0.79 +0.8
206,591 + PGA1_262p01860 0.82 +0.2
206,618 - PGA1_262p01860 0.83 -0.3
206,647 + PGA1_262p01860 0.85 -0.4
206,649 + PGA1_262p01860 0.85 -1.2
206,649 + PGA1_262p01860 0.85 -1.1
206,649 + PGA1_262p01860 0.85 -1.1
206,657 - PGA1_262p01860 0.86 -0.8
206,657 - PGA1_262p01860 0.86 +2.2
206,659 + PGA1_262p01860 0.86 -0.9
206,667 - PGA1_262p01860 0.86 +1.0
206,683 + PGA1_262p01860 0.87 -1.0
206,683 + PGA1_262p01860 0.87 +0.8
206,691 - PGA1_262p01860 0.88 +0.8
206,748 + +0.3
206,802 - -0.6
206,820 + -0.3
206,820 + +0.6
206,828 - +1.0
206,881 - +0.2
206,888 + +0.6
206,896 - +0.3
207,026 + -0.7
207,039 + -0.6
207,052 - +0.2
207,252 - PGA1_262p01870 0.23 -2.6
207,420 + PGA1_262p01870 0.40 +0.6
207,486 + PGA1_262p01870 0.46 +0.6
207,521 + PGA1_262p01870 0.50 -0.9
207,553 + PGA1_262p01870 0.53 +0.2
207,553 + PGA1_262p01870 0.53 +0.1
207,561 - PGA1_262p01870 0.54 -0.4
207,654 + PGA1_262p01870 0.63 -0.2
207,654 + PGA1_262p01870 0.63 +0.6
207,686 + PGA1_262p01870 0.66 +0.4
207,694 - PGA1_262p01870 0.67 -0.5
207,711 + PGA1_262p01870 0.68 +0.6
207,716 - PGA1_262p01870 0.69 -0.6
207,719 - PGA1_262p01870 0.69 -0.1
207,721 + PGA1_262p01870 0.69 -0.4
207,721 + PGA1_262p01870 0.69 -0.2
207,721 + PGA1_262p01870 0.69 +0.4
207,721 + PGA1_262p01870 0.69 -0.4
207,721 + PGA1_262p01870 0.69 -3.0
207,729 - PGA1_262p01870 0.70 +0.6
207,771 + PGA1_262p01870 0.74 -0.2
207,798 + PGA1_262p01870 0.77 -0.4
207,799 - PGA1_262p01870 0.77 -0.3
207,804 + PGA1_262p01870 0.77 -1.0
207,806 - PGA1_262p01870 0.78 -0.8
207,809 + PGA1_262p01870 0.78 -0.1
207,849 + PGA1_262p01870 0.82 +2.0
207,857 - PGA1_262p01870 0.83 +1.2
207,872 + PGA1_262p01870 0.84 +0.6
207,875 - PGA1_262p01870 0.84 -0.0
207,880 - PGA1_262p01870 0.85 -0.3
207,910 - PGA1_262p01870 0.88 +0.3

Or see this region's nucleotide sequence