Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35120

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35110 and PGA1_c35120 are separated by 32 nucleotidesPGA1_c35120 and PGA1_c35130 are separated by 129 nucleotidesPGA1_c35130 and PGA1_c35140 are separated by 405 nucleotides PGA1_c35110: PGA1_c35110 - tRNA modification GTPase MnmE, at 3,683,783 to 3,685,075 _c35110 PGA1_c35120: PGA1_c35120 - transcription termination factor Rho, at 3,685,108 to 3,686,379 _c35120 PGA1_c35130: PGA1_c35130 - Predicted membrane protein, at 3,686,509 to 3,686,964 _c35130 PGA1_c35140: PGA1_c35140 - Maf-like protein, at 3,687,370 to 3,687,969 _c35140 Position (kb) 3685 3686 3687Strain fitness (log2 ratio) -2 -1 0 1 2at 3686.482 kb on - strandat 3686.973 kb on - strandat 3687.165 kb on + strandat 3687.166 kb on + strandat 3687.166 kb on + strandat 3687.299 kb on - strandat 3687.338 kb on - strandat 3687.347 kb on + strandat 3687.347 kb on + strandat 3687.355 kb on - strandat 3687.371 kb on + strandat 3687.371 kb on + strandat 3687.376 kb on + strandat 3687.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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3,686,482 - -0.5
3,686,973 - +0.2
3,687,165 + +1.6
3,687,166 + +0.8
3,687,166 + +0.4
3,687,299 - +0.5
3,687,338 - +1.2
3,687,347 + +2.0
3,687,347 + +0.2
3,687,355 - -2.0
3,687,371 + +0.2
3,687,371 + +0.0
3,687,376 + -1.2
3,687,379 - +1.0

Or see this region's nucleotide sequence