Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34330

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c34320 and PGA1_c34330 are separated by 14 nucleotidesPGA1_c34330 and PGA1_c34340 are separated by 121 nucleotidesPGA1_c34340 and PGA1_c34350 are separated by 136 nucleotides PGA1_c34320: PGA1_c34320 - L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data), at 3,597,619 to 3,598,647 _c34320 PGA1_c34330: PGA1_c34330 - 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data), at 3,598,662 to 3,599,849 _c34330 PGA1_c34340: PGA1_c34340 - putative HTH-type transcriptional regulator, at 3,599,971 to 3,600,537 _c34340 PGA1_c34350: PGA1_c34350 - acetyl-CoA acetyltransferase PhbA, at 3,600,674 to 3,601,849 _c34350 Position (kb) 3598 3599 3600Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3597.715 kb on - strandat 3597.731 kb on - strand, within PGA1_c34320at 3597.731 kb on - strand, within PGA1_c34320at 3597.761 kb on - strand, within PGA1_c34320at 3597.816 kb on - strand, within PGA1_c34320at 3597.857 kb on - strand, within PGA1_c34320at 3597.878 kb on + strand, within PGA1_c34320at 3597.886 kb on - strand, within PGA1_c34320at 3597.938 kb on - strand, within PGA1_c34320at 3597.979 kb on + strand, within PGA1_c34320at 3597.996 kb on - strand, within PGA1_c34320at 3598.034 kb on - strand, within PGA1_c34320at 3598.055 kb on + strand, within PGA1_c34320at 3598.128 kb on + strand, within PGA1_c34320at 3598.128 kb on + strand, within PGA1_c34320at 3598.136 kb on + strand, within PGA1_c34320at 3598.136 kb on + strand, within PGA1_c34320at 3598.172 kb on - strand, within PGA1_c34320at 3598.179 kb on - strand, within PGA1_c34320at 3598.179 kb on - strand, within PGA1_c34320at 3598.190 kb on + strand, within PGA1_c34320at 3598.198 kb on - strand, within PGA1_c34320at 3598.198 kb on - strand, within PGA1_c34320at 3598.255 kb on + strand, within PGA1_c34320at 3598.269 kb on - strand, within PGA1_c34320at 3598.354 kb on - strand, within PGA1_c34320at 3598.365 kb on - strand, within PGA1_c34320at 3598.386 kb on + strand, within PGA1_c34320at 3598.394 kb on - strand, within PGA1_c34320at 3598.394 kb on - strand, within PGA1_c34320at 3598.394 kb on - strand, within PGA1_c34320at 3598.396 kb on + strand, within PGA1_c34320at 3598.399 kb on - strand, within PGA1_c34320at 3598.404 kb on - strand, within PGA1_c34320at 3598.489 kb on - strand, within PGA1_c34320at 3598.500 kb on + strand, within PGA1_c34320at 3598.508 kb on - strand, within PGA1_c34320at 3598.566 kb on - strandat 3598.566 kb on - strandat 3598.577 kb on - strandat 3598.614 kb on - strandat 3598.660 kb on + strandat 3598.660 kb on + strandat 3598.668 kb on - strandat 3598.761 kb on - strandat 3598.842 kb on - strand, within PGA1_c34330at 3598.842 kb on - strand, within PGA1_c34330at 3598.877 kb on - strand, within PGA1_c34330at 3598.917 kb on + strand, within PGA1_c34330at 3598.917 kb on + strand, within PGA1_c34330at 3598.925 kb on - strand, within PGA1_c34330at 3599.117 kb on + strand, within PGA1_c34330at 3599.130 kb on + strand, within PGA1_c34330at 3599.170 kb on - strand, within PGA1_c34330at 3599.348 kb on - strand, within PGA1_c34330at 3599.393 kb on + strand, within PGA1_c34330at 3599.398 kb on + strand, within PGA1_c34330at 3599.401 kb on - strand, within PGA1_c34330at 3599.410 kb on + strand, within PGA1_c34330at 3599.410 kb on + strand, within PGA1_c34330at 3599.418 kb on - strand, within PGA1_c34330at 3599.420 kb on + strand, within PGA1_c34330at 3599.428 kb on - strand, within PGA1_c34330at 3599.428 kb on - strand, within PGA1_c34330at 3599.455 kb on - strand, within PGA1_c34330at 3599.479 kb on + strand, within PGA1_c34330at 3599.487 kb on - strand, within PGA1_c34330at 3599.616 kb on + strand, within PGA1_c34330at 3599.628 kb on + strand, within PGA1_c34330at 3599.732 kb on + strandat 3599.738 kb on + strandat 3599.740 kb on - strandat 3599.753 kb on + strandat 3599.753 kb on + strandat 3599.753 kb on + strandat 3599.761 kb on - strandat 3599.764 kb on - strandat 3599.787 kb on - strandat 3599.797 kb on + strandat 3599.797 kb on + strandat 3599.805 kb on - strandat 3599.807 kb on + strandat 3599.815 kb on + strandat 3599.815 kb on - strandat 3599.849 kb on + strandat 3599.857 kb on - strandat 3599.865 kb on + strandat 3599.958 kb on + strandat 3599.958 kb on + strandat 3599.966 kb on - strandat 3599.966 kb on - strandat 3600.009 kb on - strandat 3600.011 kb on + strandat 3600.031 kb on + strand, within PGA1_c34340at 3600.031 kb on + strand, within PGA1_c34340at 3600.039 kb on - strand, within PGA1_c34340at 3600.039 kb on - strand, within PGA1_c34340at 3600.039 kb on - strand, within PGA1_c34340at 3600.039 kb on - strand, within PGA1_c34340at 3600.134 kb on + strand, within PGA1_c34340at 3600.134 kb on + strand, within PGA1_c34340at 3600.142 kb on - strand, within PGA1_c34340at 3600.185 kb on - strand, within PGA1_c34340at 3600.199 kb on - strand, within PGA1_c34340at 3600.307 kb on - strand, within PGA1_c34340at 3600.312 kb on + strand, within PGA1_c34340at 3600.312 kb on - strand, within PGA1_c34340at 3600.322 kb on + strand, within PGA1_c34340at 3600.353 kb on - strand, within PGA1_c34340at 3600.411 kb on + strand, within PGA1_c34340at 3600.417 kb on + strand, within PGA1_c34340at 3600.435 kb on - strand, within PGA1_c34340at 3600.453 kb on + strand, within PGA1_c34340at 3600.461 kb on - strand, within PGA1_c34340at 3600.461 kb on - strand, within PGA1_c34340at 3600.476 kb on - strand, within PGA1_c34340at 3600.485 kb on + strandat 3600.508 kb on + strandat 3600.553 kb on + strandat 3600.563 kb on - strandat 3600.599 kb on - strandat 3600.615 kb on + strandat 3600.657 kb on + strandat 3600.657 kb on + strandat 3600.665 kb on - strandat 3600.674 kb on - strandat 3600.764 kb on + strandat 3600.801 kb on - strand, within PGA1_c34350at 3600.801 kb on - strand, within PGA1_c34350at 3600.812 kb on - strand, within PGA1_c34350at 3600.812 kb on - strand, within PGA1_c34350

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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3,597,715 - -0.2
3,597,731 - PGA1_c34320 0.11 -4.0
3,597,731 - PGA1_c34320 0.11 -2.6
3,597,761 - PGA1_c34320 0.14 -3.1
3,597,816 - PGA1_c34320 0.19 -2.4
3,597,857 - PGA1_c34320 0.23 -3.4
3,597,878 + PGA1_c34320 0.25 -1.0
3,597,886 - PGA1_c34320 0.26 -3.1
3,597,938 - PGA1_c34320 0.31 -2.4
3,597,979 + PGA1_c34320 0.35 -3.7
3,597,996 - PGA1_c34320 0.37 -2.6
3,598,034 - PGA1_c34320 0.40 -0.2
3,598,055 + PGA1_c34320 0.42 -2.4
3,598,128 + PGA1_c34320 0.49 -3.2
3,598,128 + PGA1_c34320 0.49 -2.9
3,598,136 + PGA1_c34320 0.50 -2.0
3,598,136 + PGA1_c34320 0.50 -2.8
3,598,172 - PGA1_c34320 0.54 -2.0
3,598,179 - PGA1_c34320 0.54 -4.0
3,598,179 - PGA1_c34320 0.54 -2.2
3,598,190 + PGA1_c34320 0.55 -4.3
3,598,198 - PGA1_c34320 0.56 -0.8
3,598,198 - PGA1_c34320 0.56 -2.5
3,598,255 + PGA1_c34320 0.62 -3.6
3,598,269 - PGA1_c34320 0.63 -0.8
3,598,354 - PGA1_c34320 0.71 -3.8
3,598,365 - PGA1_c34320 0.72 +0.1
3,598,386 + PGA1_c34320 0.75 -2.4
3,598,394 - PGA1_c34320 0.75 -2.4
3,598,394 - PGA1_c34320 0.75 -2.0
3,598,394 - PGA1_c34320 0.75 -1.4
3,598,396 + PGA1_c34320 0.76 -0.8
3,598,399 - PGA1_c34320 0.76 -3.9
3,598,404 - PGA1_c34320 0.76 -3.4
3,598,489 - PGA1_c34320 0.85 -4.2
3,598,500 + PGA1_c34320 0.86 -3.0
3,598,508 - PGA1_c34320 0.86 -0.4
3,598,566 - -2.6
3,598,566 - -2.2
3,598,577 - -3.5
3,598,614 - -1.5
3,598,660 + -1.5
3,598,660 + -3.4
3,598,668 - -2.0
3,598,761 - -1.8
3,598,842 - PGA1_c34330 0.15 -3.1
3,598,842 - PGA1_c34330 0.15 -3.4
3,598,877 - PGA1_c34330 0.18 -4.0
3,598,917 + PGA1_c34330 0.21 -2.2
3,598,917 + PGA1_c34330 0.21 -2.6
3,598,925 - PGA1_c34330 0.22 -2.8
3,599,117 + PGA1_c34330 0.38 -2.0
3,599,130 + PGA1_c34330 0.39 -3.3
3,599,170 - PGA1_c34330 0.43 -2.0
3,599,348 - PGA1_c34330 0.58 -2.5
3,599,393 + PGA1_c34330 0.62 -1.2
3,599,398 + PGA1_c34330 0.62 -1.8
3,599,401 - PGA1_c34330 0.62 -1.8
3,599,410 + PGA1_c34330 0.63 -2.0
3,599,410 + PGA1_c34330 0.63 -0.5
3,599,418 - PGA1_c34330 0.64 -3.4
3,599,420 + PGA1_c34330 0.64 -3.4
3,599,428 - PGA1_c34330 0.64 -2.0
3,599,428 - PGA1_c34330 0.64 -4.0
3,599,455 - PGA1_c34330 0.67 -3.7
3,599,479 + PGA1_c34330 0.69 -3.9
3,599,487 - PGA1_c34330 0.69 -3.2
3,599,616 + PGA1_c34330 0.80 -1.0
3,599,628 + PGA1_c34330 0.81 -3.4
3,599,732 + -1.6
3,599,738 + -2.3
3,599,740 - -0.2
3,599,753 + -2.4
3,599,753 + -1.5
3,599,753 + -0.8
3,599,761 - -3.4
3,599,764 - -1.5
3,599,787 - -2.6
3,599,797 + -0.5
3,599,797 + -3.2
3,599,805 - -3.4
3,599,807 + -2.2
3,599,815 + -3.5
3,599,815 - -3.5
3,599,849 + -2.5
3,599,857 - -2.6
3,599,865 + -0.2
3,599,958 + -2.3
3,599,958 + -1.6
3,599,966 - -2.2
3,599,966 - +0.0
3,600,009 - -0.2
3,600,011 + +1.0
3,600,031 + PGA1_c34340 0.11 +0.4
3,600,031 + PGA1_c34340 0.11 -0.4
3,600,039 - PGA1_c34340 0.12 +0.6
3,600,039 - PGA1_c34340 0.12 +0.9
3,600,039 - PGA1_c34340 0.12 +0.4
3,600,039 - PGA1_c34340 0.12 -0.4
3,600,134 + PGA1_c34340 0.29 +0.6
3,600,134 + PGA1_c34340 0.29 +1.0
3,600,142 - PGA1_c34340 0.30 -0.8
3,600,185 - PGA1_c34340 0.38 +1.2
3,600,199 - PGA1_c34340 0.40 +1.4
3,600,307 - PGA1_c34340 0.59 +1.1
3,600,312 + PGA1_c34340 0.60 +0.1
3,600,312 - PGA1_c34340 0.60 +0.1
3,600,322 + PGA1_c34340 0.62 +1.2
3,600,353 - PGA1_c34340 0.67 +0.5
3,600,411 + PGA1_c34340 0.78 +0.7
3,600,417 + PGA1_c34340 0.79 +1.3
3,600,435 - PGA1_c34340 0.82 +1.1
3,600,453 + PGA1_c34340 0.85 +1.6
3,600,461 - PGA1_c34340 0.86 +0.3
3,600,461 - PGA1_c34340 0.86 +0.3
3,600,476 - PGA1_c34340 0.89 +1.9
3,600,485 + +2.4
3,600,508 + +1.7
3,600,553 + +0.8
3,600,563 - +1.0
3,600,599 - -1.5
3,600,615 + +0.1
3,600,657 + -0.2
3,600,657 + +0.7
3,600,665 - -0.2
3,600,674 - -0.5
3,600,764 + -0.1
3,600,801 - PGA1_c34350 0.11 -0.5
3,600,801 - PGA1_c34350 0.11 +1.8
3,600,812 - PGA1_c34350 0.12 -0.1
3,600,812 - PGA1_c34350 0.12 -0.4

Or see this region's nucleotide sequence