Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32440

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
3,398,976	+		PGA1_c32420	0.50	+0.1
3,398,986	+		PGA1_c32420	0.51	+0.3
3,398,986	+		PGA1_c32420	0.51	-0.8
3,398,993	+		PGA1_c32420	0.53	-0.1
3,398,999	+		PGA1_c32420	0.54	-0.6
3,399,001	-		PGA1_c32420	0.54	+0.4
3,399,041	+		PGA1_c32420	0.62	+0.2
3,399,049	-		PGA1_c32420	0.64	+0.2
3,399,059	+		PGA1_c32420	0.66	-0.3
3,399,135	+		PGA1_c32420	0.81	+0.2
3,399,135	+		PGA1_c32420	0.81	-1.5
3,399,137	-		PGA1_c32420	0.81	+0.7
3,399,177	-		PGA1_c32420	0.89	-1.4
3,399,177	-		PGA1_c32420	0.89	-1.2
3,399,241	+				-0.2
3,399,241	+				-2.2
3,399,273	-				+0.3
3,399,290	-				-0.7
3,399,298	+				-0.9
3,399,300	-				+0.0
3,399,300	-				-1.0
3,399,356	-				-1.2
3,399,363	+				-0.2
3,399,379	+		PGA1_c32430	0.11	-0.0
3,399,387	-		PGA1_c32430	0.12	+0.1
3,399,395	+		PGA1_c32430	0.14	+0.3
3,399,408	-		PGA1_c32430	0.16	+0.4
3,399,427	+		PGA1_c32430	0.19	-0.8
3,399,464	-		PGA1_c32430	0.26	+0.3
3,399,493	-		PGA1_c32430	0.31	+2.0
3,399,529	+		PGA1_c32430	0.38	+0.7
3,399,530	-		PGA1_c32430	0.38	+0.8
3,399,530	-		PGA1_c32430	0.38	+0.2
3,399,533	+		PGA1_c32430	0.38	-1.0
3,399,548	+		PGA1_c32430	0.41	-0.5
3,399,550	+		PGA1_c32430	0.41	+0.1
3,399,576	-		PGA1_c32430	0.46	+0.6
3,399,588	-		PGA1_c32430	0.48	-0.4
3,399,599	-		PGA1_c32430	0.50	+0.2
3,399,625	+		PGA1_c32430	0.55	-1.2
3,399,633	+		PGA1_c32430	0.56	+0.6
3,399,686	+		PGA1_c32430	0.66	-0.6
3,399,699	-		PGA1_c32430	0.68	-0.2
3,399,699	-		PGA1_c32430	0.68	-0.2
3,399,699	-		PGA1_c32430	0.68	+0.5
3,399,753	-		PGA1_c32430	0.78	+1.0
3,399,763	-		PGA1_c32430	0.80	+0.6
3,399,777	+		PGA1_c32430	0.82	+0.9
3,399,777	+		PGA1_c32430	0.82	+0.3
3,399,783	-		PGA1_c32430	0.83	-1.8
3,399,840	-				-1.8
3,399,884	+				+0.1
3,399,884	+				+0.2
3,399,884	+				+1.5
3,399,892	-				-0.4
3,399,892	-				-0.3
3,399,892	-				+0.6
3,399,892	-				+0.5
3,399,892	-				+0.8
3,399,892	-				+0.4
3,399,892	-				-0.4
3,399,892	-				-2.0
3,399,927	+				-0.3
3,399,956	+				-0.0
3,400,019	+				+0.5
3,400,036	-				+0.5
3,400,103	+				+0.3
3,400,160	+				-1.5
3,400,168	-				-2.2
3,400,359	+		PGA1_c32440	0.15	-0.2
3,400,468	+		PGA1_c32440	0.19	+0.1
3,400,469	+				-0.2
3,400,481	+		PGA1_c32440	0.19	+1.2
3,400,486	+		PGA1_c32440	0.20	-0.4
3,400,525	+		PGA1_c32440	0.21	-0.8
3,400,530	+		PGA1_c32440	0.21	-0.2
3,400,580	-		PGA1_c32440	0.23	+0.0
3,400,595	-		PGA1_c32440	0.24	-1.0
3,400,625	+		PGA1_c32440	0.25	-0.9
3,400,625	+		PGA1_c32440	0.25	-0.6
3,400,625	+		PGA1_c32440	0.25	-1.4
3,400,633	-		PGA1_c32440	0.25	+0.1
3,400,633	-		PGA1_c32440	0.25	-1.5
3,400,633	-		PGA1_c32440	0.25	-0.3
3,400,693	+		PGA1_c32440	0.27	-0.8
3,400,693	+		PGA1_c32440	0.27	-0.3
3,400,749	-		PGA1_c32440	0.29	-1.5
3,400,833	+		PGA1_c32440	0.32	-0.7
3,400,841	-		PGA1_c32440	0.33	+0.1
3,400,841	-		PGA1_c32440	0.33	-0.8
3,400,862	-		PGA1_c32440	0.33	-0.9
3,400,945	+		PGA1_c32440	0.37	-1.8
3,400,993	-		PGA1_c32440	0.38	-1.0
3,401,003	+		PGA1_c32440	0.39	-1.7
3,401,067	+		PGA1_c32440	0.41	-0.5
3,401,067	+		PGA1_c32440	0.41	-0.5
3,401,067	+		PGA1_c32440	0.41	+0.4
3,401,075	-		PGA1_c32440	0.41	-0.6
3,401,075	-		PGA1_c32440	0.41	-0.7
3,401,075	-		PGA1_c32440	0.41	-1.6
3,401,075	-		PGA1_c32440	0.41	+0.2
3,401,075	-		PGA1_c32440	0.41	-0.6
3,401,075	-		PGA1_c32440	0.41	-0.4
3,401,085	-		PGA1_c32440	0.42	-1.1
3,401,085	-		PGA1_c32440	0.42	-0.7
3,401,146	-		PGA1_c32440	0.44	-0.3
3,401,189	-		PGA1_c32440	0.46	+0.4
3,401,226	+		PGA1_c32440	0.47	-0.5
3,401,281	+		PGA1_c32440	0.49	-0.2
3,401,352	+		PGA1_c32440	0.52	-0.3
3,401,352	+		PGA1_c32440	0.52	-2.7
3,401,465	+		PGA1_c32440	0.56	-1.4
3,401,473	-		PGA1_c32440	0.56	-0.5
3,401,473	-		PGA1_c32440	0.56	-1.8
3,401,473	-		PGA1_c32440	0.56	+0.4
3,401,582	-		PGA1_c32440	0.60	+0.4
3,401,588	+		PGA1_c32440	0.60	+0.5
3,401,655	+		PGA1_c32440	0.63	-0.4
3,401,663	-		PGA1_c32440	0.63	-0.2
3,401,673	-		PGA1_c32440	0.63	-0.9
3,401,676	+		PGA1_c32440	0.64	-0.5
3,401,684	-		PGA1_c32440	0.64	-0.5
3,401,684	-		PGA1_c32440	0.64	-0.2
3,401,684	-		PGA1_c32440	0.64	-1.0
3,401,721	+		PGA1_c32440	0.65	-0.0
3,401,729	-		PGA1_c32440	0.66	+0.3
3,401,786	+		PGA1_c32440	0.68	-0.9
3,401,799	-		PGA1_c32440	0.68	+0.0
3,401,806	-		PGA1_c32440	0.68	-1.1
3,401,850	+		PGA1_c32440	0.70	-1.2
3,401,919	+		PGA1_c32440	0.73	-1.0
3,401,927	-		PGA1_c32440	0.73	-1.0
3,401,927	-		PGA1_c32440	0.73	+0.5
3,401,978	+		PGA1_c32440	0.75	+0.0
3,401,993	+		PGA1_c32440	0.75	-0.5
3,402,001	-		PGA1_c32440	0.76	-0.7
3,402,004	+		PGA1_c32440	0.76	-0.4
3,402,074	-		PGA1_c32440	0.78	-0.4
3,402,183	+		PGA1_c32440	0.82	+0.2
3,402,213	+		PGA1_c32440	0.83	+0.5
3,402,215	-		PGA1_c32440	0.84	+0.4
3,402,225	+		PGA1_c32440	0.84	-1.1
3,402,257	-		PGA1_c32440	0.85	-1.2
3,402,267	-		PGA1_c32440	0.85	+0.0
3,402,310	+		PGA1_c32440	0.87	-0.1
3,402,318	-		PGA1_c32440	0.87	-0.4
3,402,318	-		PGA1_c32440	0.87	-1.8
3,402,348	-		PGA1_c32440	0.88	+0.2
3,402,365	-		PGA1_c32440	0.89	-0.2
3,402,469	-				-0.2
3,402,504	+				-0.1
3,402,521	+				-1.2
3,402,521	+				-0.6
3,402,521	+				-1.0
3,402,594	-				+0.4
3,402,596	+				-0.0
3,402,597	-				-0.0
3,402,638	+				+0.2
3,402,646	-				-0.8
3,402,646	-				-1.0
3,402,660	-				-0.8
3,402,679	+				+0.3
3,402,685	-				-1.3
3,402,725	+				-0.0
3,402,725	+				+0.4
3,402,725	+				+0.8
3,402,725	+				+1.4
3,402,733	-				+3.4
3,402,733	-				+0.8
3,402,733	-				+0.5
3,402,733	-				-2.8
3,402,733	-				-0.7
3,402,761	-				+0.9
3,402,763	+				+0.3
3,402,808	+				-0.4
3,402,834	-				-0.5
3,402,860	-				+0.9
3,402,867	-				+1.0
3,402,867	-				+1.1
3,402,867	-				+0.4
3,402,867	-				-0.5
3,402,867	-				-0.0
3,402,871	+				-2.4
3,402,882	+				+0.2
3,402,890	-				-0.7
3,402,897	+				-1.8
3,402,927	-				-1.8
3,403,044	+		PGA1_c32450	0.19	-2.5
3,403,068	+		PGA1_c32450	0.23	-1.8
3,403,076	-		PGA1_c32450	0.24	-2.0
3,403,077	-		PGA1_c32450	0.24	-2.0
3,403,123	+		PGA1_c32450	0.30	-4.0
3,403,171	+		PGA1_c32450	0.37	-3.1
3,403,283	+		PGA1_c32450	0.52	-4.2
3,403,288	+		PGA1_c32450	0.53	-3.1
3,403,289	-		PGA1_c32450	0.53	-1.4
3,403,289	-		PGA1_c32450	0.53	-3.2
3,403,298	-		PGA1_c32450	0.54	-2.4
3,403,330	-		PGA1_c32450	0.58	-2.5
3,403,347	-		PGA1_c32450	0.61	-1.3
3,403,358	-		PGA1_c32450	0.62	-3.5
3,403,444	-		PGA1_c32450	0.74	-1.7
3,403,463	+		PGA1_c32450	0.77	-1.2
3,403,473	-		PGA1_c32450	0.78	-0.8
3,403,481	+		PGA1_c32450	0.79	-3.0
3,403,543	+		PGA1_c32450	0.87	-2.7
3,403,602	+				-3.0
3,403,606	+				-1.3
3,403,620	+				+0.2
3,403,651	+				+0.8
3,403,651	+				-0.5