Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03060

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03030 and PGA1_c03040 overlap by 4 nucleotidesPGA1_c03040 and PGA1_c03050 are separated by 1 nucleotidesPGA1_c03050 and PGA1_c03060 are separated by 3 nucleotidesPGA1_c03060 and PGA1_c03070 are separated by 106 nucleotidesPGA1_c03070 and PGA1_c03080 are separated by 76 nucleotides PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861 _c03030 PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241 _c03040 PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800 _c03050 PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799 _c03060 PGA1_c03070: PGA1_c03070 - putative uracil DNA glycosylase, at 293,906 to 294,667 _c03070 PGA1_c03080: PGA1_c03080 - molybdenum cofactor biosynthesis protein B, at 294,744 to 295,286 _c03080 Position (kb) 292 293 294Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 291.806 kb on - strand, within PGA1_c03030at 291.825 kb on + strandat 291.851 kb on + strandat 291.851 kb on + strandat 291.851 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.859 kb on - strandat 291.859 kb on - strandat 291.863 kb on + strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.893 kb on + strandat 291.898 kb on + strand, within PGA1_c03040at 291.898 kb on + strand, within PGA1_c03040at 291.906 kb on - strand, within PGA1_c03040at 291.918 kb on - strand, within PGA1_c03040at 291.924 kb on + strand, within PGA1_c03040at 291.932 kb on + strand, within PGA1_c03040at 291.940 kb on - strand, within PGA1_c03040at 291.963 kb on - strand, within PGA1_c03040at 291.968 kb on - strand, within PGA1_c03040at 292.007 kb on - strand, within PGA1_c03040at 292.063 kb on + strand, within PGA1_c03040at 292.093 kb on - strand, within PGA1_c03040at 292.093 kb on - strand, within PGA1_c03040at 292.117 kb on + strand, within PGA1_c03040at 292.117 kb on + strand, within PGA1_c03040at 292.183 kb on + strand, within PGA1_c03040at 292.214 kb on + strandat 292.239 kb on - strandat 292.273 kb on + strandat 292.276 kb on - strandat 292.276 kb on - strandat 292.330 kb on + strand, within PGA1_c03050at 292.335 kb on + strand, within PGA1_c03050at 292.335 kb on + strand, within PGA1_c03050at 292.335 kb on + strand, within PGA1_c03050at 292.338 kb on - strand, within PGA1_c03050at 292.343 kb on - strand, within PGA1_c03050at 292.365 kb on - strand, within PGA1_c03050at 292.408 kb on + strand, within PGA1_c03050at 292.416 kb on - strand, within PGA1_c03050at 292.425 kb on + strand, within PGA1_c03050at 292.426 kb on - strand, within PGA1_c03050at 292.552 kb on + strand, within PGA1_c03050at 292.602 kb on + strand, within PGA1_c03050at 292.610 kb on - strand, within PGA1_c03050at 292.653 kb on - strand, within PGA1_c03050at 292.763 kb on - strandat 292.887 kb on + strandat 292.898 kb on + strandat 292.898 kb on + strandat 293.003 kb on + strand, within PGA1_c03060at 293.191 kb on - strand, within PGA1_c03060at 293.259 kb on + strand, within PGA1_c03060at 293.259 kb on + strand, within PGA1_c03060at 293.261 kb on + strand, within PGA1_c03060at 293.272 kb on + strand, within PGA1_c03060at 293.280 kb on - strand, within PGA1_c03060at 293.350 kb on + strand, within PGA1_c03060at 293.363 kb on - strand, within PGA1_c03060at 293.419 kb on + strand, within PGA1_c03060at 293.500 kb on - strand, within PGA1_c03060at 293.535 kb on - strand, within PGA1_c03060at 293.553 kb on - strand, within PGA1_c03060at 293.623 kb on + strand, within PGA1_c03060at 293.637 kb on - strand, within PGA1_c03060at 293.641 kb on - strand, within PGA1_c03060at 293.641 kb on - strand, within PGA1_c03060at 293.643 kb on + strand, within PGA1_c03060at 293.651 kb on - strand, within PGA1_c03060at 293.676 kb on + strand, within PGA1_c03060at 293.676 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.679 kb on + strand, within PGA1_c03060at 293.684 kb on - strand, within PGA1_c03060at 293.687 kb on - strand, within PGA1_c03060at 293.790 kb on - strandat 293.794 kb on + strandat 293.797 kb on - strandat 293.806 kb on + strandat 293.825 kb on + strandat 293.825 kb on + strandat 293.825 kb on + strandat 293.832 kb on - strandat 293.832 kb on - strandat 293.832 kb on - strandat 293.832 kb on - strandat 293.832 kb on - strandat 293.836 kb on + strandat 293.836 kb on + strandat 293.836 kb on + strandat 293.844 kb on - strandat 293.844 kb on - strandat 293.844 kb on - strandat 293.844 kb on - strandat 293.858 kb on + strandat 293.879 kb on - strandat 293.882 kb on + strandat 293.892 kb on + strandat 294.640 kb on + strandat 294.648 kb on - strandat 294.648 kb on - strandat 294.729 kb on - strandat 294.734 kb on + strandat 294.742 kb on - strandat 294.742 kb on - strandat 294.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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291,806 - PGA1_c03030 0.90 -1.5
291,825 + -0.7
291,851 + -0.2
291,851 + -1.3
291,851 + -1.5
291,856 + +0.5
291,856 + -0.1
291,856 + -0.1
291,856 + +0.3
291,856 + +1.1
291,856 + +0.7
291,859 - +0.1
291,859 - +0.8
291,863 + +2.0
291,864 - +0.1
291,864 - +0.1
291,864 - -0.8
291,864 - +0.2
291,864 - -1.0
291,864 - -0.1
291,864 - -0.4
291,864 - -1.0
291,864 - -0.4
291,864 - -1.1
291,893 + -0.5
291,898 + PGA1_c03040 0.10 -0.4
291,898 + PGA1_c03040 0.10 -0.2
291,906 - PGA1_c03040 0.12 +0.2
291,918 - PGA1_c03040 0.16 -1.5
291,924 + PGA1_c03040 0.17 -1.4
291,932 + PGA1_c03040 0.19 +0.0
291,940 - PGA1_c03040 0.21 +0.0
291,963 - PGA1_c03040 0.27 +0.5
291,968 - PGA1_c03040 0.29 -1.2
292,007 - PGA1_c03040 0.39 +0.3
292,063 + PGA1_c03040 0.53 -0.3
292,093 - PGA1_c03040 0.61 +0.5
292,093 - PGA1_c03040 0.61 -0.1
292,117 + PGA1_c03040 0.67 -0.5
292,117 + PGA1_c03040 0.67 +0.5
292,183 + PGA1_c03040 0.85 +0.5
292,214 + -0.8
292,239 - +0.9
292,273 + -0.8
292,276 - +0.6
292,276 - +1.1
292,330 + PGA1_c03050 0.16 -0.8
292,335 + PGA1_c03050 0.16 -0.4
292,335 + PGA1_c03050 0.16 +0.4
292,335 + PGA1_c03050 0.16 -0.1
292,338 - PGA1_c03050 0.17 -0.4
292,343 - PGA1_c03050 0.18 -1.5
292,365 - PGA1_c03050 0.22 -0.7
292,408 + PGA1_c03050 0.30 +2.4
292,416 - PGA1_c03050 0.31 -1.5
292,425 + PGA1_c03050 0.33 -0.5
292,426 - PGA1_c03050 0.33 +0.8
292,552 + PGA1_c03050 0.55 -0.4
292,602 + PGA1_c03050 0.64 +0.4
292,610 - PGA1_c03050 0.66 -0.2
292,653 - PGA1_c03050 0.73 -0.5
292,763 - -0.5
292,887 + -2.4
292,898 + -1.6
292,898 + -3.1
293,003 + PGA1_c03060 0.20 -2.2
293,191 - PGA1_c03060 0.39 -1.6
293,259 + PGA1_c03060 0.46 -2.9
293,259 + PGA1_c03060 0.46 -3.3
293,261 + PGA1_c03060 0.46 -2.8
293,272 + PGA1_c03060 0.47 -3.8
293,280 - PGA1_c03060 0.48 -3.1
293,350 + PGA1_c03060 0.55 -3.2
293,363 - PGA1_c03060 0.56 -3.5
293,419 + PGA1_c03060 0.62 -2.6
293,500 - PGA1_c03060 0.70 -2.6
293,535 - PGA1_c03060 0.73 -3.3
293,553 - PGA1_c03060 0.75 -2.2
293,623 + PGA1_c03060 0.82 -1.4
293,637 - PGA1_c03060 0.84 -0.6
293,641 - PGA1_c03060 0.84 -1.5
293,641 - PGA1_c03060 0.84 -2.7
293,643 + PGA1_c03060 0.84 -2.7
293,651 - PGA1_c03060 0.85 -2.7
293,676 + PGA1_c03060 0.88 -2.7
293,676 + PGA1_c03060 0.88 -2.4
293,679 + PGA1_c03060 0.88 -2.8
293,679 + PGA1_c03060 0.88 -2.6
293,679 + PGA1_c03060 0.88 -3.8
293,679 + PGA1_c03060 0.88 -1.6
293,679 + PGA1_c03060 0.88 -3.0
293,684 - PGA1_c03060 0.88 -1.6
293,687 - PGA1_c03060 0.89 -3.8
293,790 - -3.9
293,794 + -1.6
293,797 - -2.8
293,806 + -0.6
293,825 + +0.4
293,825 + -0.7
293,825 + -0.0
293,832 - +0.3
293,832 - +0.3
293,832 - -0.1
293,832 - +2.2
293,832 - +0.6
293,836 + +0.3
293,836 + +2.4
293,836 + +1.0
293,844 - -0.5
293,844 - -0.2
293,844 - -1.2
293,844 - +0.8
293,858 + -0.5
293,879 - +0.1
293,882 + +0.4
293,892 + +0.2
294,640 + -0.8
294,648 - +0.5
294,648 - -0.2
294,729 - +0.3
294,734 + +1.1
294,742 - -1.6
294,742 - -0.5
294,753 + +0.3

Or see this region's nucleotide sequence