Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20930

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
2,168,910	-				+3.6
2,168,910	-				-1.4
2,168,910	-				+0.4
2,168,944	+				+0.5
2,168,952	-				-0.0
2,168,952	-				+0.4
2,168,973	+				+0.7
2,168,978	+				-1.1
2,168,986	-				+1.4
2,168,999	+				+0.4
2,168,999	+				+1.0
2,169,007	-				+0.2
2,169,019	+				-0.4
2,169,027	+				-1.8
2,169,027	+				-1.0
2,169,027	+				+2.0
2,169,027	+				-1.2
2,169,035	-				+0.7
2,169,035	-				+0.0
2,169,035	-				-1.2
2,169,081	-				+0.0
2,169,102	-				+1.4
2,169,114	+				+1.8
2,169,122	-				-0.6
2,169,122	-				-1.5
2,169,156	+				-0.9
2,169,156	+				+0.6
2,169,164	+				-0.6
2,169,167	-				-1.2
2,169,167	-				+0.1
2,169,167	-				-0.5
2,169,212	-				-0.5
2,169,325	-		PGA1_c20920	0.20	-0.8
2,169,335	-		PGA1_c20920	0.22	-0.8
2,169,457	-		PGA1_c20920	0.50	+0.0
2,169,541	-		PGA1_c20920	0.69	-2.4
2,169,541	-		PGA1_c20920	0.69	-2.4
2,169,545	+		PGA1_c20920	0.70	-0.6
2,169,553	-		PGA1_c20920	0.71	-0.2
2,169,698	-				-0.7
2,169,962	-				-4.8
2,169,982	+				-3.6
2,170,010	-		PGA1_c20930	0.11	-0.9
2,170,017	+		PGA1_c20930	0.11	-3.3
2,170,022	+		PGA1_c20930	0.11	-1.6
2,170,025	-		PGA1_c20930	0.12	-0.6
2,170,090	+		PGA1_c20930	0.15	-3.7
2,170,098	+		PGA1_c20930	0.16	-3.7
2,170,172	+		PGA1_c20930	0.20	-3.5
2,170,192	+		PGA1_c20930	0.21	-3.6
2,170,207	+		PGA1_c20930	0.22	-3.0
2,170,215	-		PGA1_c20930	0.22	-1.7
2,170,261	+		PGA1_c20930	0.25	-2.9
2,170,261	+		PGA1_c20930	0.25	-2.6
2,170,261	+		PGA1_c20930	0.25	-4.2
2,170,269	-		PGA1_c20930	0.25	-3.4
2,170,269	-		PGA1_c20930	0.25	-1.9
2,170,303	+		PGA1_c20930	0.27	-1.9
2,170,333	+		PGA1_c20930	0.28	-1.6
2,170,333	+		PGA1_c20930	0.28	-2.6
2,170,333	+		PGA1_c20930	0.28	-3.7
2,170,341	-		PGA1_c20930	0.29	-1.9
2,170,342	-		PGA1_c20930	0.29	-1.2
2,170,348	-		PGA1_c20930	0.29	-0.7
2,170,360	+		PGA1_c20930	0.30	-3.7
2,170,368	-		PGA1_c20930	0.30	-1.4
2,170,375	+		PGA1_c20930	0.31	-4.4
2,170,383	+		PGA1_c20930	0.31	-2.7
2,170,391	-		PGA1_c20930	0.32	-3.2
2,170,413	+		PGA1_c20930	0.33	-3.9
2,170,437	+		PGA1_c20930	0.34	-4.8
2,170,603	+		PGA1_c20930	0.43	-1.2
2,170,611	-		PGA1_c20930	0.44	-3.0
2,170,638	+		PGA1_c20930	0.45	-1.6
2,170,638	+		PGA1_c20930	0.45	-2.9
2,170,638	+		PGA1_c20930	0.45	-2.0
2,170,638	+		PGA1_c20930	0.45	-3.5
2,170,646	-		PGA1_c20930	0.46	-1.7
2,170,646	-		PGA1_c20930	0.46	-3.5
2,170,646	-		PGA1_c20930	0.46	-2.7
2,170,646	-		PGA1_c20930	0.46	-1.6
2,170,646	-		PGA1_c20930	0.46	-2.7
2,170,707	-		PGA1_c20930	0.49	-2.9
2,170,712	-		PGA1_c20930	0.49	-2.2
2,170,726	-		PGA1_c20930	0.50	-3.2
2,170,740	-		PGA1_c20930	0.51	-1.6
2,170,743	+		PGA1_c20930	0.51	-3.1
2,170,752	-		PGA1_c20930	0.51	-2.1
2,170,759	+		PGA1_c20930	0.52	-3.2
2,170,768	+		PGA1_c20930	0.52	-3.6
2,170,768	+		PGA1_c20930	0.52	-1.9
2,170,770	+		PGA1_c20930	0.52	-3.9
2,170,770	+		PGA1_c20930	0.52	-4.2
2,170,770	+		PGA1_c20930	0.52	-2.7
2,170,776	-		PGA1_c20930	0.53	-0.3
2,170,776	-		PGA1_c20930	0.53	-3.4
2,170,776	-		PGA1_c20930	0.53	-2.6
2,170,777	-		PGA1_c20930	0.53	-3.8
2,170,778	-		PGA1_c20930	0.53	-2.9
2,170,783	-		PGA1_c20930	0.53	-2.9
2,170,805	+		PGA1_c20930	0.54	-2.7
2,170,805	+		PGA1_c20930	0.54	-2.7
2,170,805	+		PGA1_c20930	0.54	-1.6
2,170,813	-		PGA1_c20930	0.55	-2.6
2,170,813	-		PGA1_c20930	0.55	-2.7
2,170,813	-		PGA1_c20930	0.55	-3.3
2,170,820	-		PGA1_c20930	0.55	-3.2
2,170,881	-		PGA1_c20930	0.58	-1.2
2,170,898	+		PGA1_c20930	0.59	-1.9
2,170,912	-		PGA1_c20930	0.60	-3.6
2,170,939	+		PGA1_c20930	0.62	-3.0
2,170,939	+		PGA1_c20930	0.62	-3.8
2,171,049	+		PGA1_c20930	0.68	-3.3
2,171,049	+		PGA1_c20930	0.68	-2.4
2,171,049	+		PGA1_c20930	0.68	-2.4
2,171,049	+		PGA1_c20930	0.68	-4.0
2,171,049	+		PGA1_c20930	0.68	-3.5
2,171,049	+		PGA1_c20930	0.68	-2.5
2,171,049	+		PGA1_c20930	0.68	-2.9
2,171,057	-		PGA1_c20930	0.68	-4.0
2,171,057	-		PGA1_c20930	0.68	-4.0
2,171,057	-		PGA1_c20930	0.68	-1.2
2,171,057	-		PGA1_c20930	0.68	-3.2
2,171,057	-		PGA1_c20930	0.68	-1.7
2,171,067	-		PGA1_c20930	0.69	-3.2
2,171,082	+		PGA1_c20930	0.69	-4.7
2,171,220	+		PGA1_c20930	0.77	-3.4
2,171,226	+		PGA1_c20930	0.77	-3.2
2,171,226	+		PGA1_c20930	0.77	-3.2
2,171,234	-		PGA1_c20930	0.78	-3.6
2,171,240	-		PGA1_c20930	0.78	-2.5
2,171,243	-		PGA1_c20930	0.78	-3.4
2,171,302	+		PGA1_c20930	0.81	-1.9
2,171,310	-		PGA1_c20930	0.82	-2.4
2,171,324	+		PGA1_c20930	0.83	-3.2
2,171,324	+		PGA1_c20930	0.83	-1.9
2,171,326	+		PGA1_c20930	0.83	-3.7
2,171,326	+		PGA1_c20930	0.83	-4.2
2,171,326	+		PGA1_c20930	0.83	-3.8
2,171,326	+		PGA1_c20930	0.83	-3.3
2,171,326	+		PGA1_c20930	0.83	-3.0
2,171,332	-		PGA1_c20930	0.83	-4.0
2,171,332	-		PGA1_c20930	0.83	-2.7
2,171,332	-		PGA1_c20930	0.83	-4.2
2,171,334	-		PGA1_c20930	0.83	-2.4
2,171,334	-		PGA1_c20930	0.83	-2.6
2,171,334	-		PGA1_c20930	0.83	-2.3
2,171,334	-		PGA1_c20930	0.83	-2.5
2,171,334	-		PGA1_c20930	0.83	-1.6
2,171,334	-		PGA1_c20930	0.83	-2.4
2,171,334	-		PGA1_c20930	0.83	-1.6
2,171,334	-		PGA1_c20930	0.83	-3.0
2,171,334	-		PGA1_c20930	0.83	-3.2
2,171,334	-		PGA1_c20930	0.83	-3.3
2,171,334	-		PGA1_c20930	0.83	-3.6
2,171,334	-		PGA1_c20930	0.83	-2.4
2,171,334	-		PGA1_c20930	0.83	-2.9
2,171,334	-		PGA1_c20930	0.83	-2.9
2,171,334	-		PGA1_c20930	0.83	-3.4
2,171,334	-		PGA1_c20930	0.83	-4.0
2,171,334	-		PGA1_c20930	0.83	-3.2
2,171,334	-		PGA1_c20930	0.83	-0.9
2,171,334	-		PGA1_c20930	0.83	-2.4
2,171,334	-		PGA1_c20930	0.83	-2.2
2,171,390	+		PGA1_c20930	0.86	-2.2
2,171,392	+		PGA1_c20930	0.86	-3.4
2,171,453	+		PGA1_c20930	0.90	-1.2
2,171,467	-				-2.3
2,171,497	-				-4.0
2,171,506	-				-2.4
2,171,617	+				-2.9
2,171,625	-				-4.0
2,171,625	-				+0.7
2,171,630	-				-0.2
2,171,634	+				-1.1
2,171,637	-				-1.6
2,171,642	-				+0.7
2,171,661	+				-0.7
2,171,671	+				-0.7
2,171,673	+				+0.4
2,171,673	+				+2.0
2,171,673	+				-0.2
2,171,679	-				+0.2
2,171,679	-				-0.0
2,171,681	-				+1.0
2,171,681	-				+0.1
2,171,681	-				-1.0
2,171,696	-				-0.2
2,171,697	+				+0.6
2,171,705	-				+0.3
2,171,729	+				-0.9
2,171,769	+				+0.4
2,171,769	+				+0.2
2,171,789	+				-0.7
2,171,790	+				+0.0
2,171,821	-				-0.4
2,171,821	-				-0.5
2,171,828	-				+0.8
2,171,856	+				-1.0
2,171,859	-				-0.2
2,171,902	-				-1.9
2,171,954	+		PGA1_c20940	0.13	+0.9
2,171,993	+		PGA1_c20940	0.16	+0.1
2,171,996	-		PGA1_c20940	0.16	+1.0
2,172,001	-		PGA1_c20940	0.17	+0.1
2,172,090	+		PGA1_c20940	0.24	+0.4
2,172,093	-		PGA1_c20940	0.24	+0.3
2,172,141	+		PGA1_c20940	0.28	+0.4
2,172,144	-		PGA1_c20940	0.28	-0.6
2,172,144	-		PGA1_c20940	0.28	+0.3
2,172,144	-		PGA1_c20940	0.28	-0.2
2,172,149	-		PGA1_c20940	0.28	+0.6
2,172,190	+		PGA1_c20940	0.32	+0.1
2,172,202	+		PGA1_c20940	0.33	-0.4
2,172,202	+		PGA1_c20940	0.33	+0.9
2,172,202	+		PGA1_c20940	0.33	-0.8
2,172,202	+		PGA1_c20940	0.33	-1.7
2,172,391	+		PGA1_c20940	0.47	+0.6
2,172,433	+		PGA1_c20940	0.51	-1.0
2,172,527	-		PGA1_c20940	0.58	-0.7
2,172,533	+		PGA1_c20940	0.59	-1.1
2,172,541	-		PGA1_c20940	0.59	+0.2
2,172,589	+		PGA1_c20940	0.63	+0.9
2,172,629	+		PGA1_c20940	0.66	-1.6
2,172,633	-		PGA1_c20940	0.66	-0.5