Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20180

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
2,092,125	+		PGA1_c20170	0.13	-0.6
2,092,175	-		PGA1_c20170	0.19	+0.9
2,092,234	-		PGA1_c20170	0.25	+0.9
2,092,248	+		PGA1_c20170	0.27	-0.2
2,092,266	-		PGA1_c20170	0.29	-0.2
2,092,266	-		PGA1_c20170	0.29	+0.5
2,092,282	+		PGA1_c20170	0.30	+0.5
2,092,322	-		PGA1_c20170	0.35	+1.0
2,092,452	+		PGA1_c20170	0.49	+1.0
2,092,452	+		PGA1_c20170	0.49	+0.8
2,092,488	+		PGA1_c20170	0.53	+0.2
2,092,541	-		PGA1_c20170	0.58	+1.6
2,092,632	-		PGA1_c20170	0.68	+1.1
2,092,650	+		PGA1_c20170	0.70	+1.3
2,092,656	-		PGA1_c20170	0.71	+1.3
2,092,670	+		PGA1_c20170	0.72	-0.6
2,092,693	+		PGA1_c20170	0.75	+0.7
2,092,704	-		PGA1_c20170	0.76	+0.9
2,092,731	+		PGA1_c20170	0.79	+1.2
2,092,739	-		PGA1_c20170	0.80	+1.1
2,092,754	-		PGA1_c20170	0.81	+1.2
2,092,802	+				+1.1
2,092,810	-		PGA1_c20170	0.87	+0.9
2,092,810	-		PGA1_c20170	0.87	+0.2
2,092,810	-		PGA1_c20170	0.87	+1.6
2,092,810	-		PGA1_c20170	0.87	+0.8
2,092,810	-		PGA1_c20170	0.87	+0.6
2,092,858	+				+1.4
2,092,858	+				+1.1
2,092,858	+				+0.3
2,092,858	+				+0.8
2,092,858	+				+0.4
2,092,858	+				+0.2
2,092,858	+				+0.5
2,092,858	+				+0.8
2,092,858	+				+0.0
2,092,858	+				+0.2
2,092,858	+				+1.7
2,092,858	+				+0.5
2,092,858	+				+0.7
2,092,858	+				+0.8
2,092,858	+				+0.6
2,092,858	+				+1.1
2,092,858	+				+1.3
2,092,858	+				-1.2
2,092,866	-				+0.8
2,092,866	-				+1.3
2,092,866	-				+0.9
2,092,866	-				+0.9
2,092,866	-				+1.9
2,092,866	-				+0.4
2,092,866	-				+0.2
2,092,866	-				+0.4
2,092,866	-				+0.1
2,092,866	-				-0.4
2,092,866	-				+1.6
2,092,866	-				+0.8
2,092,866	-				-0.5
2,092,866	-				+1.4
2,092,866	-				+0.6
2,092,866	-				+0.9
2,092,868	+				+1.3
2,092,868	+				+0.0
2,092,868	+				+0.2
2,092,868	+				+1.2
2,092,868	+				+0.9
2,092,868	+				+1.9
2,092,868	+				+1.3
2,092,868	+				+0.9
2,092,868	+				+1.7
2,092,868	+				+0.1
2,092,876	-				+1.5
2,092,876	-				+0.6
2,092,876	-				+1.2
2,092,876	-				+0.7
2,092,876	-				+2.2
2,092,876	-				+0.2
2,092,876	-				+0.6
2,092,881	-				+0.8
2,092,882	+				+1.0
2,092,882	+				+0.9
2,092,885	+				+0.4
2,092,890	-				+0.2
2,092,921	-				+0.5
2,092,951	+				+1.0
2,092,959	-				+0.4
2,092,959	-				+0.6
2,092,959	-				+0.9
2,092,959	-				+1.7
2,092,959	-				+1.5
2,093,007	-				+0.7
2,093,015	+				+1.1
2,093,025	+				+0.2
2,093,025	-				+0.5
2,093,073	+				+1.8
2,093,105	+				+0.5
2,093,105	+				+0.4
2,093,105	+				+0.4
2,093,105	+				+0.9
2,093,106	+				+0.5
2,093,114	-				+0.5
2,093,145	+				-0.6
2,093,176	-				+0.8
2,093,177	-				+0.7
2,093,226	+		PGA1_c20180	0.11	+1.2
2,093,290	+		PGA1_c20180	0.17	+0.2
2,093,324	+		PGA1_c20180	0.20	+1.3
2,093,324	+		PGA1_c20180	0.20	+0.3
2,093,324	+		PGA1_c20180	0.20	+1.2
2,093,337	+		PGA1_c20180	0.21	+0.8
2,093,364	-		PGA1_c20180	0.24	+0.3
2,093,369	+		PGA1_c20180	0.24	-0.1
2,093,410	-		PGA1_c20180	0.28	+0.0
2,093,434	+		PGA1_c20180	0.30	-0.1
2,093,535	-		PGA1_c20180	0.39	+0.1
2,093,568	+		PGA1_c20180	0.42	+0.1
2,093,590	+		PGA1_c20180	0.45	+0.4
2,093,614	-		PGA1_c20180	0.47	+1.1
2,093,630	+		PGA1_c20180	0.48	+1.4
2,093,638	-		PGA1_c20180	0.49	+1.3
2,093,650	+		PGA1_c20180	0.50	+0.4
2,093,650	+		PGA1_c20180	0.50	+0.4
2,093,658	-		PGA1_c20180	0.51	+2.1
2,093,675	+		PGA1_c20180	0.52	+0.1
2,093,786	-		PGA1_c20180	0.63	+1.4
2,093,788	+		PGA1_c20180	0.63	+0.8
2,093,788	+		PGA1_c20180	0.63	+0.3
2,093,788	+		PGA1_c20180	0.63	+1.9
2,093,796	-		PGA1_c20180	0.64	+1.9
2,093,805	+		PGA1_c20180	0.64	+0.9
2,093,824	+		PGA1_c20180	0.66	+0.1
2,093,865	+		PGA1_c20180	0.70	+1.0
2,093,879	-		PGA1_c20180	0.71	+1.3
2,093,884	-		PGA1_c20180	0.72	+0.9
2,093,916	-		PGA1_c20180	0.75	+0.6
2,093,923	+		PGA1_c20180	0.75	+1.3
2,093,923	+		PGA1_c20180	0.75	+0.8
2,093,926	-		PGA1_c20180	0.76	+0.1
2,094,008	-		PGA1_c20180	0.83	+2.0
2,094,047	+		PGA1_c20180	0.87	+1.4
2,094,055	-		PGA1_c20180	0.87	+1.0
2,094,055	-		PGA1_c20180	0.87	+1.1
2,094,083	-				+0.6
2,094,096	+				+0.8
2,094,103	-				+1.3
2,094,104	-				-1.2
2,094,104	-				+0.1
2,094,104	-				+1.3
2,094,104	-				+0.2
2,094,104	-				+0.2
2,094,104	-				-0.1
2,094,111	-				+0.9
2,094,114	-				+1.2
2,094,115	-				+0.0
2,094,139	-				-0.3
2,094,149	+				+0.2
2,094,157	+				+1.6
2,094,157	-				+1.5
2,094,185	+				+0.2
2,094,185	+				+0.5
2,094,193	-				+0.6
2,094,193	-				+0.8
2,094,200	-				+0.6
2,094,200	-				+0.9
2,094,227	-				+0.6
2,094,227	-				+1.3
2,094,244	-				-0.1
2,094,254	+				+2.1
2,094,254	+				+1.3
2,094,254	+				-0.6
2,094,254	+				+1.0
2,094,254	+				+1.1
2,094,254	+				+0.1
2,094,258	-				+0.2
2,094,262	-				-0.6
2,094,262	-				+0.4
2,094,262	-				+1.2
2,094,273	-				+0.1
2,094,288	+				-0.1
2,094,288	+				-0.8
2,094,288	+				+0.4
2,094,296	-				+1.0
2,094,346	+				+1.6
2,094,346	+				-0.3
2,094,346	+				+0.2
2,094,346	+				-0.1
2,094,354	-				+0.5
2,094,354	-				+0.6
2,094,396	+				+0.4
2,094,444	+				+0.9
2,094,494	+				-0.3
2,094,510	-				+1.4
2,094,554	-				+1.1
2,094,557	-				+0.8
2,094,677	+		PGA1_c20190	0.16	+2.4
2,094,681	-		PGA1_c20190	0.17	-0.2
2,094,685	-		PGA1_c20190	0.17	+0.3
2,094,714	+		PGA1_c20190	0.19	-0.0
2,094,783	+		PGA1_c20190	0.24	+1.0
2,094,786	-		PGA1_c20190	0.24	-1.0
2,094,788	+		PGA1_c20190	0.24	-0.9
2,094,793	+		PGA1_c20190	0.25	+1.1
2,094,793	+		PGA1_c20190	0.25	+0.1
2,094,842	-		PGA1_c20190	0.28	+1.2
2,094,842	-		PGA1_c20190	0.28	+0.9
2,094,856	-		PGA1_c20190	0.29	+2.3
2,094,892	+		PGA1_c20190	0.31	+0.8
2,094,909	-		PGA1_c20190	0.33	-1.0
2,094,958	+		PGA1_c20190	0.36	-0.4
2,094,975	-		PGA1_c20190	0.37	+1.2
2,094,975	-		PGA1_c20190	0.37	+1.0
2,095,017	+		PGA1_c20190	0.40	+0.1
2,095,025	-		PGA1_c20190	0.41	+0.7
2,095,039	+		PGA1_c20190	0.42	+0.6
2,095,118	-		PGA1_c20190	0.47	+0.2
2,095,134	+		PGA1_c20190	0.48	+0.8
2,095,142	-		PGA1_c20190	0.49	-1.3
2,095,180	+		PGA1_c20190	0.52	+1.4