Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02420

Experiment: PYE 0.5x 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_R0057 and CCNA_02419 are separated by 128 nucleotidesCCNA_02419 and CCNA_02420 are separated by 10 nucleotidesCCNA_02420 and CCNA_02421 are separated by 5 nucleotides CCNA_R0057: CCNA_R0057 - tRNA-His, at 2,563,345 to 2,563,421 _R0057 CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281 _02419 CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726 _02420 CCNA_02421: CCNA_02421 - TonB accessory protein exbB, at 2,564,732 to 2,565,640 _02421 Position (kb) 2564 2565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2563.541 kb on + strandat 2563.601 kb on - strandat 2563.625 kb on - strand, within CCNA_02419at 2563.637 kb on - strand, within CCNA_02419at 2563.706 kb on + strand, within CCNA_02419at 2563.714 kb on - strand, within CCNA_02419at 2563.718 kb on + strand, within CCNA_02419at 2563.726 kb on - strand, within CCNA_02419at 2563.734 kb on + strand, within CCNA_02419at 2563.780 kb on + strand, within CCNA_02419at 2563.785 kb on + strand, within CCNA_02419at 2563.793 kb on - strand, within CCNA_02419at 2563.802 kb on + strand, within CCNA_02419at 2563.810 kb on - strand, within CCNA_02419at 2563.895 kb on - strand, within CCNA_02419at 2564.081 kb on + strand, within CCNA_02419at 2564.235 kb on - strandat 2564.303 kb on + strandat 2564.308 kb on + strandat 2564.668 kb on + strand, within CCNA_02420at 2565.640 kb on + strandat 2565.661 kb on + strandat 2565.706 kb on + strandat 2565.711 kb on + strandat 2565.711 kb on + strandat 2565.711 kb on + strandat 2565.711 kb on + strandat 2565.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep1 12 days
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2,563,541 + +1.4
2,563,601 - +0.6
2,563,625 - CCNA_02419 0.10 +0.5
2,563,637 - CCNA_02419 0.12 +0.5
2,563,706 + CCNA_02419 0.21 -0.5
2,563,714 - CCNA_02419 0.22 +0.9
2,563,718 + CCNA_02419 0.23 -0.3
2,563,726 - CCNA_02419 0.24 +0.9
2,563,734 + CCNA_02419 0.25 +0.9
2,563,780 + CCNA_02419 0.31 +1.1
2,563,785 + CCNA_02419 0.32 -0.5
2,563,793 - CCNA_02419 0.33 +1.6
2,563,802 + CCNA_02419 0.34 -1.1
2,563,810 - CCNA_02419 0.36 +1.3
2,563,895 - CCNA_02419 0.47 +0.8
2,564,081 + CCNA_02419 0.73 +2.5
2,564,235 - +1.2
2,564,303 + -3.9
2,564,308 + -0.7
2,564,668 + CCNA_02420 0.86 -1.3
2,565,640 + -0.9
2,565,661 + +1.5
2,565,706 + +1.5
2,565,711 + +1.9
2,565,711 + +2.5
2,565,711 + -0.1
2,565,711 + -0.5
2,565,719 - +3.0

Or see this region's nucleotide sequence