Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01724

Experiment: PYE 0.5x 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01723 and CCNA_01724 are separated by 152 nucleotidesCCNA_01724 and CCNA_01725 overlap by 4 nucleotides CCNA_01723: CCNA_01723 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,849,599 to 1,850,426 _01723 CCNA_01724: CCNA_01724 - hypothetical protein, at 1,850,579 to 1,851,331 _01724 CCNA_01725: CCNA_01725 - beta-barrel assembly machine (BAM) protein BamB, at 1,851,328 to 1,852,758 _01725 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -2 -1 0 1 2at 1850.421 kb on + strandat 1850.454 kb on + strandat 1850.454 kb on + strandat 1850.456 kb on + strandat 1850.462 kb on - strandat 1850.503 kb on + strandat 1850.526 kb on + strandat 1850.569 kb on + strandat 1850.623 kb on + strandat 1850.653 kb on + strandat 1850.743 kb on + strand, within CCNA_01724at 1850.812 kb on + strand, within CCNA_01724at 1850.974 kb on + strand, within CCNA_01724at 1851.244 kb on - strand, within CCNA_01724at 1851.244 kb on - strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724at 1851.250 kb on + strand, within CCNA_01724

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep1 12 days
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1,850,421 + -1.3
1,850,454 + -1.2
1,850,454 + +0.0
1,850,456 + +0.6
1,850,462 - +1.7
1,850,503 + -2.2
1,850,526 + +1.7
1,850,569 + +1.7
1,850,623 + +0.7
1,850,653 + +1.1
1,850,743 + CCNA_01724 0.22 +2.7
1,850,812 + CCNA_01724 0.31 +2.7
1,850,974 + CCNA_01724 0.52 +2.7
1,851,244 - CCNA_01724 0.88 +2.7
1,851,244 - CCNA_01724 0.88 +2.7
1,851,250 + CCNA_01724 0.89 -1.6
1,851,250 + CCNA_01724 0.89 +0.7
1,851,250 + CCNA_01724 0.89 -0.9

Or see this region's nucleotide sequence