Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01722

Experiment: PYE 0.5x 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03893 and CCNA_01721 are separated by 22 nucleotidesCCNA_01721 and CCNA_01722 overlap by 32 nucleotidesCCNA_01722 and CCNA_01723 are separated by 92 nucleotides CCNA_03893: CCNA_03893 - hypothetical protein, at 1,848,134 to 1,848,526 _03893 CCNA_01721: CCNA_01721 - RNA polymerase ECF sigma factor, at 1,848,549 to 1,849,133 _01721 CCNA_01722: CCNA_01722 - hypothetical protein, at 1,849,102 to 1,849,506 _01722 CCNA_01723: CCNA_01723 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,849,599 to 1,850,426 _01723 Position (kb) 1849 1850Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1848.189 kb on - strand, within CCNA_03893at 1848.268 kb on + strand, within CCNA_03893at 1848.292 kb on + strand, within CCNA_03893at 1848.323 kb on + strand, within CCNA_03893at 1848.331 kb on - strand, within CCNA_03893at 1848.386 kb on + strand, within CCNA_03893at 1848.461 kb on + strand, within CCNA_03893at 1848.495 kb on + strandat 1848.495 kb on + strandat 1848.520 kb on + strandat 1848.520 kb on + strandat 1848.536 kb on + strandat 1848.537 kb on + strandat 1848.589 kb on + strandat 1848.597 kb on - strandat 1848.614 kb on - strand, within CCNA_01721at 1848.629 kb on + strand, within CCNA_01721at 1848.666 kb on + strand, within CCNA_01721at 1848.674 kb on - strand, within CCNA_01721at 1848.675 kb on - strand, within CCNA_01721at 1848.731 kb on + strand, within CCNA_01721at 1848.812 kb on + strand, within CCNA_01721at 1848.812 kb on + strand, within CCNA_01721at 1848.820 kb on - strand, within CCNA_01721at 1848.820 kb on - strand, within CCNA_01721at 1848.827 kb on + strand, within CCNA_01721at 1848.881 kb on - strand, within CCNA_01721at 1848.936 kb on + strand, within CCNA_01721at 1848.936 kb on + strand, within CCNA_01721at 1848.988 kb on + strand, within CCNA_01721at 1849.044 kb on + strand, within CCNA_01721at 1849.052 kb on - strand, within CCNA_01721at 1849.122 kb on + strandat 1849.122 kb on + strandat 1849.122 kb on + strandat 1849.122 kb on + strandat 1849.130 kb on - strandat 1849.198 kb on + strandat 1849.200 kb on + strand, within CCNA_01722at 1849.277 kb on + strand, within CCNA_01722at 1849.282 kb on + strand, within CCNA_01722at 1849.282 kb on + strand, within CCNA_01722at 1849.520 kb on + strandat 1850.421 kb on + strandat 1850.454 kb on + strandat 1850.454 kb on + strandat 1850.456 kb on + strandat 1850.462 kb on - strandat 1850.503 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep1 12 days
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1,848,189 - CCNA_03893 0.14 +1.1
1,848,268 + CCNA_03893 0.34 +0.4
1,848,292 + CCNA_03893 0.40 +0.9
1,848,323 + CCNA_03893 0.48 +3.7
1,848,331 - CCNA_03893 0.50 +0.0
1,848,386 + CCNA_03893 0.64 -0.5
1,848,461 + CCNA_03893 0.83 -0.5
1,848,495 + -0.0
1,848,495 + -2.5
1,848,520 + -1.3
1,848,520 + -1.9
1,848,536 + -5.6
1,848,537 + -1.4
1,848,589 + +0.3
1,848,597 - +1.7
1,848,614 - CCNA_01721 0.11 +1.1
1,848,629 + CCNA_01721 0.14 +0.7
1,848,666 + CCNA_01721 0.20 -0.1
1,848,674 - CCNA_01721 0.21 +1.1
1,848,675 - CCNA_01721 0.22 +1.1
1,848,731 + CCNA_01721 0.31 +1.7
1,848,812 + CCNA_01721 0.45 +0.7
1,848,812 + CCNA_01721 0.45 +1.7
1,848,820 - CCNA_01721 0.46 +0.3
1,848,820 - CCNA_01721 0.46 +1.1
1,848,827 + CCNA_01721 0.48 -0.1
1,848,881 - CCNA_01721 0.57 +1.1
1,848,936 + CCNA_01721 0.66 +0.5
1,848,936 + CCNA_01721 0.66 +0.0
1,848,988 + CCNA_01721 0.75 +0.7
1,849,044 + CCNA_01721 0.85 +0.5
1,849,052 - CCNA_01721 0.86 +2.5
1,849,122 + +1.1
1,849,122 + +0.3
1,849,122 + +0.7
1,849,122 + +0.4
1,849,130 - +0.3
1,849,198 + -1.0
1,849,200 + CCNA_01722 0.24 -4.7
1,849,277 + CCNA_01722 0.43 -3.5
1,849,282 + CCNA_01722 0.44 -4.5
1,849,282 + CCNA_01722 0.44 -3.9
1,849,520 + -0.1
1,850,421 + -1.3
1,850,454 + -1.2
1,850,454 + +0.0
1,850,456 + +0.6
1,850,462 - +1.7
1,850,503 + -2.2

Or see this region's nucleotide sequence