Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01041

Experiment: PYE 0.5x 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01040 and CCNA_01041 are separated by 0 nucleotidesCCNA_01041 and CCNA_01042 are separated by 562 nucleotides CCNA_01040: CCNA_01040 - beta-xylosidase/alpha-L-arabinofuranosidase, at 1,134,929 to 1,136,569 _01040 CCNA_01041: CCNA_01041 - hypothetical protein, at 1,136,570 to 1,136,704 _01041 CCNA_01042: CCNA_01042 - TonB-dependent receptor, at 1,137,267 to 1,139,762 _01042 Position (kb) 1136 1137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1135.583 kb on + strand, within CCNA_01040at 1135.591 kb on - strand, within CCNA_01040at 1135.591 kb on - strand, within CCNA_01040at 1135.610 kb on - strand, within CCNA_01040at 1135.620 kb on - strand, within CCNA_01040at 1135.637 kb on - strand, within CCNA_01040at 1135.640 kb on - strand, within CCNA_01040at 1135.653 kb on + strand, within CCNA_01040at 1135.657 kb on + strand, within CCNA_01040at 1135.661 kb on - strandat 1135.661 kb on - strand, within CCNA_01040at 1135.661 kb on - strand, within CCNA_01040at 1135.696 kb on - strand, within CCNA_01040at 1135.748 kb on + strand, within CCNA_01040at 1135.754 kb on - strand, within CCNA_01040at 1135.754 kb on - strand, within CCNA_01040at 1135.754 kb on - strand, within CCNA_01040at 1135.756 kb on + strand, within CCNA_01040at 1135.790 kb on + strand, within CCNA_01040at 1135.798 kb on - strand, within CCNA_01040at 1135.820 kb on - strand, within CCNA_01040at 1135.822 kb on + strand, within CCNA_01040at 1135.863 kb on - strand, within CCNA_01040at 1135.868 kb on - strand, within CCNA_01040at 1135.868 kb on - strand, within CCNA_01040at 1135.868 kb on - strand, within CCNA_01040at 1135.868 kb on - strand, within CCNA_01040at 1135.898 kb on - strand, within CCNA_01040at 1135.909 kb on + strand, within CCNA_01040at 1135.917 kb on - strand, within CCNA_01040at 1135.950 kb on + strand, within CCNA_01040at 1136.001 kb on + strand, within CCNA_01040at 1136.051 kb on + strand, within CCNA_01040at 1136.051 kb on + strand, within CCNA_01040at 1136.051 kb on + strand, within CCNA_01040at 1136.059 kb on - strand, within CCNA_01040at 1136.059 kb on - strand, within CCNA_01040at 1136.059 kb on - strand, within CCNA_01040at 1136.061 kb on - strand, within CCNA_01040at 1136.063 kb on + strandat 1136.071 kb on - strand, within CCNA_01040at 1136.082 kb on - strand, within CCNA_01040at 1136.085 kb on + strand, within CCNA_01040at 1136.104 kb on + strand, within CCNA_01040at 1136.117 kb on - strand, within CCNA_01040at 1136.131 kb on - strand, within CCNA_01040at 1136.139 kb on - strand, within CCNA_01040at 1136.162 kb on + strand, within CCNA_01040at 1136.170 kb on - strand, within CCNA_01040at 1136.170 kb on - strand, within CCNA_01040at 1136.184 kb on + strand, within CCNA_01040at 1136.242 kb on + strand, within CCNA_01040at 1136.243 kb on + strand, within CCNA_01040at 1136.251 kb on - strand, within CCNA_01040at 1136.251 kb on - strand, within CCNA_01040at 1136.315 kb on + strand, within CCNA_01040at 1136.321 kb on - strand, within CCNA_01040at 1136.321 kb on - strand, within CCNA_01040at 1136.345 kb on - strand, within CCNA_01040at 1136.365 kb on - strand, within CCNA_01040at 1136.426 kb on - strandat 1136.452 kb on + strandat 1136.529 kb on + strandat 1136.529 kb on + strandat 1136.537 kb on - strandat 1136.552 kb on + strandat 1136.598 kb on + strand, within CCNA_01041at 1136.606 kb on - strand, within CCNA_01041at 1136.606 kb on - strand, within CCNA_01041at 1136.606 kb on - strand, within CCNA_01041at 1136.671 kb on + strand, within CCNA_01041at 1136.671 kb on + strand, within CCNA_01041at 1136.671 kb on + strand, within CCNA_01041at 1136.671 kb on + strand, within CCNA_01041at 1136.679 kb on - strand, within CCNA_01041at 1136.720 kb on + strandat 1136.739 kb on + strandat 1136.739 kb on + strandat 1136.739 kb on + strandat 1136.739 kb on + strandat 1136.747 kb on - strandat 1136.747 kb on - strandat 1136.747 kb on - strandat 1136.748 kb on - strandat 1136.752 kb on + strandat 1136.828 kb on - strandat 1136.844 kb on + strandat 1136.872 kb on + strandat 1136.880 kb on - strandat 1136.880 kb on - strandat 1136.888 kb on - strandat 1136.926 kb on - strandat 1136.932 kb on - strandat 1136.934 kb on + strandat 1136.934 kb on + strandat 1136.934 kb on + strandat 1136.942 kb on - strandat 1136.944 kb on + strandat 1136.952 kb on - strandat 1136.963 kb on - strandat 1136.990 kb on + strandat 1137.008 kb on - strandat 1137.093 kb on - strandat 1137.098 kb on - strandat 1137.101 kb on + strandat 1137.119 kb on + strandat 1137.127 kb on - strandat 1137.128 kb on - strandat 1137.161 kb on + strandat 1137.161 kb on + strandat 1137.161 kb on + strandat 1137.161 kb on + strandat 1137.169 kb on - strandat 1137.169 kb on - strandat 1137.205 kb on - strandat 1137.207 kb on - strandat 1137.264 kb on - strandat 1137.265 kb on + strandat 1137.271 kb on - strandat 1137.273 kb on - strandat 1137.274 kb on + strandat 1137.284 kb on + strandat 1137.333 kb on + strandat 1137.333 kb on + strandat 1137.362 kb on - strandat 1137.363 kb on - strandat 1137.363 kb on - strandat 1137.368 kb on - strandat 1137.373 kb on - strandat 1137.376 kb on - strandat 1137.396 kb on + strandat 1137.404 kb on - strandat 1137.421 kb on - strandat 1137.465 kb on + strandat 1137.474 kb on - strandat 1137.505 kb on - strandat 1137.510 kb on + strandat 1137.510 kb on + strandat 1137.516 kb on + strandat 1137.516 kb on + strandat 1137.524 kb on - strand, within CCNA_01042at 1137.524 kb on - strand, within CCNA_01042at 1137.524 kb on - strand, within CCNA_01042at 1137.524 kb on - strand, within CCNA_01042at 1137.524 kb on - strand, within CCNA_01042at 1137.531 kb on + strand, within CCNA_01042at 1137.531 kb on + strand, within CCNA_01042at 1137.584 kb on - strand, within CCNA_01042at 1137.584 kb on - strand, within CCNA_01042at 1137.584 kb on - strand, within CCNA_01042at 1137.621 kb on - strand, within CCNA_01042at 1137.632 kb on + strand, within CCNA_01042at 1137.640 kb on - strand, within CCNA_01042at 1137.651 kb on + strand, within CCNA_01042at 1137.676 kb on + strand, within CCNA_01042at 1137.677 kb on - strand, within CCNA_01042at 1137.678 kb on + strand, within CCNA_01042at 1137.684 kb on - strand, within CCNA_01042at 1137.684 kb on - strand, within CCNA_01042at 1137.684 kb on - strand, within CCNA_01042

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep1 12 days
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1,135,583 + CCNA_01040 0.40 -0.8
1,135,591 - CCNA_01040 0.40 +0.4
1,135,591 - CCNA_01040 0.40 -2.2
1,135,610 - CCNA_01040 0.41 -0.5
1,135,620 - CCNA_01040 0.42 +0.6
1,135,637 - CCNA_01040 0.43 -1.5
1,135,640 - CCNA_01040 0.43 +1.5
1,135,653 + CCNA_01040 0.44 -2.4
1,135,657 + CCNA_01040 0.44 -0.4
1,135,661 - +0.8
1,135,661 - CCNA_01040 0.45 -0.4
1,135,661 - CCNA_01040 0.45 -0.2
1,135,696 - CCNA_01040 0.47 -1.5
1,135,748 + CCNA_01040 0.50 -0.4
1,135,754 - CCNA_01040 0.50 -0.6
1,135,754 - CCNA_01040 0.50 -2.1
1,135,754 - CCNA_01040 0.50 -0.8
1,135,756 + CCNA_01040 0.50 +0.4
1,135,790 + CCNA_01040 0.52 +0.2
1,135,798 - CCNA_01040 0.53 +0.4
1,135,820 - CCNA_01040 0.54 +0.4
1,135,822 + CCNA_01040 0.54 -2.1
1,135,863 - CCNA_01040 0.57 -0.6
1,135,868 - CCNA_01040 0.57 +0.6
1,135,868 - CCNA_01040 0.57 +1.6
1,135,868 - CCNA_01040 0.57 -1.3
1,135,868 - CCNA_01040 0.57 -0.8
1,135,898 - CCNA_01040 0.59 -0.6
1,135,909 + CCNA_01040 0.60 -1.3
1,135,917 - CCNA_01040 0.60 +0.1
1,135,950 + CCNA_01040 0.62 +1.1
1,136,001 + CCNA_01040 0.65 -0.4
1,136,051 + CCNA_01040 0.68 +0.5
1,136,051 + CCNA_01040 0.68 -0.9
1,136,051 + CCNA_01040 0.68 +0.6
1,136,059 - CCNA_01040 0.69 -0.6
1,136,059 - CCNA_01040 0.69 +0.6
1,136,059 - CCNA_01040 0.69 -0.7
1,136,061 - CCNA_01040 0.69 +0.3
1,136,063 + -0.6
1,136,071 - CCNA_01040 0.70 +0.4
1,136,082 - CCNA_01040 0.70 +0.1
1,136,085 + CCNA_01040 0.70 +0.2
1,136,104 + CCNA_01040 0.72 +0.4
1,136,117 - CCNA_01040 0.72 -0.1
1,136,131 - CCNA_01040 0.73 +0.8
1,136,139 - CCNA_01040 0.74 +0.1
1,136,162 + CCNA_01040 0.75 -0.4
1,136,170 - CCNA_01040 0.76 +0.3
1,136,170 - CCNA_01040 0.76 -1.2
1,136,184 + CCNA_01040 0.76 -0.6
1,136,242 + CCNA_01040 0.80 +1.4
1,136,243 + CCNA_01040 0.80 -1.3
1,136,251 - CCNA_01040 0.81 -0.8
1,136,251 - CCNA_01040 0.81 -0.6
1,136,315 + CCNA_01040 0.84 +0.2
1,136,321 - CCNA_01040 0.85 -0.2
1,136,321 - CCNA_01040 0.85 +0.1
1,136,345 - CCNA_01040 0.86 +0.3
1,136,365 - CCNA_01040 0.88 +0.8
1,136,426 - +0.1
1,136,452 + +2.4
1,136,529 + +0.8
1,136,529 + -0.8
1,136,537 - -0.4
1,136,552 + +0.8
1,136,598 + CCNA_01041 0.21 +0.1
1,136,606 - CCNA_01041 0.27 -1.1
1,136,606 - CCNA_01041 0.27 +0.7
1,136,606 - CCNA_01041 0.27 -0.2
1,136,671 + CCNA_01041 0.75 -0.7
1,136,671 + CCNA_01041 0.75 -0.1
1,136,671 + CCNA_01041 0.75 -0.1
1,136,671 + CCNA_01041 0.75 -0.5
1,136,679 - CCNA_01041 0.81 -0.8
1,136,720 + -0.1
1,136,739 + -0.1
1,136,739 + +0.1
1,136,739 + +1.1
1,136,739 + -0.1
1,136,747 - +0.6
1,136,747 - +0.8
1,136,747 - +0.2
1,136,748 - -0.3
1,136,752 + -0.4
1,136,828 - +0.6
1,136,844 + -0.4
1,136,872 + +1.2
1,136,880 - +0.3
1,136,880 - -0.2
1,136,888 - -0.3
1,136,926 - -0.9
1,136,932 - -0.8
1,136,934 + +0.4
1,136,934 + -2.3
1,136,934 + -0.4
1,136,942 - -0.9
1,136,944 + +0.1
1,136,952 - +0.2
1,136,963 - -1.3
1,136,990 + -1.5
1,137,008 - +1.0
1,137,093 - -0.2
1,137,098 - -0.2
1,137,101 + +0.1
1,137,119 + -0.0
1,137,127 - -0.8
1,137,128 - +0.1
1,137,161 + -0.1
1,137,161 + +0.3
1,137,161 + +0.5
1,137,161 + +0.9
1,137,169 - -0.5
1,137,169 - +0.0
1,137,205 - +0.4
1,137,207 - +0.4
1,137,264 - -1.2
1,137,265 + -1.8
1,137,271 - -0.7
1,137,273 - -1.5
1,137,274 + +0.8
1,137,284 + -2.4
1,137,333 + +0.1
1,137,333 + -1.8
1,137,362 - -2.0
1,137,363 - -1.0
1,137,363 - -1.6
1,137,368 - -2.0
1,137,373 - -2.0
1,137,376 - -1.6
1,137,396 + -0.4
1,137,404 - -1.8
1,137,421 - -1.2
1,137,465 + -2.7
1,137,474 - -1.4
1,137,505 - -2.3
1,137,510 + -3.2
1,137,510 + -1.8
1,137,516 + -1.6
1,137,516 + -0.9
1,137,524 - CCNA_01042 0.10 -2.4
1,137,524 - CCNA_01042 0.10 -1.2
1,137,524 - CCNA_01042 0.10 -1.3
1,137,524 - CCNA_01042 0.10 -1.8
1,137,524 - CCNA_01042 0.10 -2.1
1,137,531 + CCNA_01042 0.11 +1.4
1,137,531 + CCNA_01042 0.11 +0.4
1,137,584 - CCNA_01042 0.13 -1.5
1,137,584 - CCNA_01042 0.13 -1.8
1,137,584 - CCNA_01042 0.13 -0.6
1,137,621 - CCNA_01042 0.14 -3.0
1,137,632 + CCNA_01042 0.15 +0.1
1,137,640 - CCNA_01042 0.15 -1.7
1,137,651 + CCNA_01042 0.15 -1.9
1,137,676 + CCNA_01042 0.16 -1.5
1,137,677 - CCNA_01042 0.16 -1.2
1,137,678 + CCNA_01042 0.16 -0.1
1,137,684 - CCNA_01042 0.17 -2.2
1,137,684 - CCNA_01042 0.17 -2.3
1,137,684 - CCNA_01042 0.17 -3.0

Or see this region's nucleotide sequence