Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00564

Experiment: PYE 0.5x 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00562 and CCNA_00563 overlap by 4 nucleotidesCCNA_00563 and CCNA_00564 are separated by 9 nucleotidesCCNA_00564 and CCNA_00565 are separated by 63 nucleotides CCNA_00562: CCNA_00562 - dihydroorotate dehydrogenase, at 576,665 to 577,723 _00562 CCNA_00563: CCNA_00563 - SNARE-associated family membrane protein, at 577,720 to 578,457 _00563 CCNA_00564: CCNA_00564 - sensory transduction protein kinase CenK, at 578,467 to 579,972 _00564 CCNA_00565: CCNA_00565 - gamma-glutamyltranspeptidase, at 580,036 to 581,778 _00565 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 577.474 kb on + strand, within CCNA_00562at 577.526 kb on + strand, within CCNA_00562at 577.571 kb on + strand, within CCNA_00562at 577.598 kb on + strand, within CCNA_00562at 577.603 kb on + strand, within CCNA_00562at 577.603 kb on + strand, within CCNA_00562at 577.606 kb on - strand, within CCNA_00562at 577.608 kb on + strand, within CCNA_00562at 577.613 kb on + strand, within CCNA_00562at 577.616 kb on - strand, within CCNA_00562at 577.618 kb on + strandat 577.626 kb on - strandat 577.629 kb on + strandat 577.634 kb on + strandat 577.702 kb on - strandat 577.726 kb on - strandat 577.732 kb on - strandat 577.735 kb on + strandat 577.735 kb on + strandat 577.735 kb on + strandat 577.743 kb on - strandat 577.754 kb on + strandat 577.773 kb on + strandat 577.793 kb on - strandat 577.887 kb on + strand, within CCNA_00563at 577.887 kb on + strand, within CCNA_00563at 577.887 kb on + strand, within CCNA_00563at 577.895 kb on - strand, within CCNA_00563at 577.899 kb on + strand, within CCNA_00563at 577.957 kb on - strand, within CCNA_00563at 578.000 kb on + strand, within CCNA_00563at 578.035 kb on + strand, within CCNA_00563at 578.043 kb on - strand, within CCNA_00563at 578.082 kb on - strand, within CCNA_00563at 578.082 kb on - strand, within CCNA_00563at 578.082 kb on - strand, within CCNA_00563at 578.122 kb on + strand, within CCNA_00563at 578.134 kb on + strand, within CCNA_00563at 578.135 kb on + strand, within CCNA_00563at 578.142 kb on - strand, within CCNA_00563at 578.153 kb on + strand, within CCNA_00563at 578.161 kb on - strand, within CCNA_00563at 578.164 kb on + strand, within CCNA_00563at 578.172 kb on - strand, within CCNA_00563at 578.213 kb on + strand, within CCNA_00563at 578.214 kb on + strand, within CCNA_00563at 578.221 kb on + strand, within CCNA_00563at 578.221 kb on + strand, within CCNA_00563at 578.236 kb on - strand, within CCNA_00563at 578.236 kb on - strand, within CCNA_00563at 578.240 kb on + strand, within CCNA_00563at 578.240 kb on + strand, within CCNA_00563at 578.248 kb on - strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.293 kb on + strand, within CCNA_00563at 578.296 kb on - strand, within CCNA_00563at 578.296 kb on - strand, within CCNA_00563at 578.301 kb on - strand, within CCNA_00563at 578.301 kb on - strand, within CCNA_00563at 578.301 kb on - strand, within CCNA_00563at 578.307 kb on - strand, within CCNA_00563at 578.307 kb on - strandat 578.307 kb on - strand, within CCNA_00563at 578.357 kb on + strand, within CCNA_00563at 579.999 kb on + strandat 579.999 kb on + strandat 579.999 kb on + strandat 580.007 kb on - strandat 580.042 kb on - strandat 580.050 kb on - strandat 580.068 kb on + strandat 580.068 kb on + strandat 580.076 kb on - strandat 580.076 kb on - strandat 580.093 kb on + strandat 580.114 kb on + strandat 580.122 kb on - strandat 580.135 kb on - strandat 580.135 kb on - strandat 580.135 kb on - strandat 580.137 kb on + strandat 580.150 kb on - strandat 580.157 kb on - strandat 580.173 kb on - strandat 580.249 kb on - strand, within CCNA_00565at 580.269 kb on + strand, within CCNA_00565at 580.274 kb on + strand, within CCNA_00565at 580.277 kb on - strand, within CCNA_00565at 580.289 kb on + strand, within CCNA_00565at 580.292 kb on - strand, within CCNA_00565at 580.303 kb on - strand, within CCNA_00565at 580.310 kb on - strand, within CCNA_00565at 580.314 kb on + strand, within CCNA_00565at 580.314 kb on + strand, within CCNA_00565at 580.322 kb on - strand, within CCNA_00565at 580.352 kb on + strand, within CCNA_00565at 580.360 kb on - strand, within CCNA_00565at 580.361 kb on + strand, within CCNA_00565at 580.444 kb on + strand, within CCNA_00565at 580.496 kb on - strand, within CCNA_00565at 580.524 kb on - strand, within CCNA_00565at 580.531 kb on - strand, within CCNA_00565at 580.553 kb on + strand, within CCNA_00565at 580.553 kb on + strand, within CCNA_00565at 580.561 kb on - strand, within CCNA_00565at 580.561 kb on - strand, within CCNA_00565at 580.561 kb on - strand, within CCNA_00565at 580.611 kb on + strand, within CCNA_00565at 580.624 kb on - strand, within CCNA_00565at 580.625 kb on - strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.634 kb on + strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.642 kb on - strand, within CCNA_00565at 580.783 kb on - strand, within CCNA_00565at 580.787 kb on + strand, within CCNA_00565at 580.793 kb on + strand, within CCNA_00565at 580.793 kb on + strand, within CCNA_00565at 580.793 kb on + strand, within CCNA_00565at 580.793 kb on + strand, within CCNA_00565at 580.801 kb on - strand, within CCNA_00565at 580.801 kb on - strand, within CCNA_00565at 580.801 kb on - strand, within CCNA_00565at 580.806 kb on - strand, within CCNA_00565at 580.808 kb on + strand, within CCNA_00565at 580.852 kb on - strand, within CCNA_00565at 580.862 kb on - strand, within CCNA_00565at 580.871 kb on + strand, within CCNA_00565at 580.879 kb on - strand, within CCNA_00565at 580.879 kb on - strand, within CCNA_00565at 580.897 kb on - strand, within CCNA_00565at 580.902 kb on - strand, within CCNA_00565at 580.902 kb on - strand, within CCNA_00565at 580.919 kb on + strand, within CCNA_00565at 580.919 kb on + strand, within CCNA_00565at 580.919 kb on + strand, within CCNA_00565at 580.919 kb on + strand, within CCNA_00565at 580.919 kb on + strand, within CCNA_00565at 580.919 kb on + strand, within CCNA_00565at 580.919 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.927 kb on - strand, within CCNA_00565at 580.939 kb on + strand, within CCNA_00565at 580.945 kb on - strand, within CCNA_00565at 580.945 kb on - strand, within CCNA_00565at 580.947 kb on - strand, within CCNA_00565at 580.947 kb on - strand, within CCNA_00565at 580.947 kb on - strand, within CCNA_00565at 580.947 kb on - strand, within CCNA_00565at 580.972 kb on + strand, within CCNA_00565

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep1 12 days
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577,474 + CCNA_00562 0.76 -1.9
577,526 + CCNA_00562 0.81 -3.5
577,571 + CCNA_00562 0.86 -1.9
577,598 + CCNA_00562 0.88 -2.9
577,603 + CCNA_00562 0.89 -2.4
577,603 + CCNA_00562 0.89 -2.1
577,606 - CCNA_00562 0.89 -2.8
577,608 + CCNA_00562 0.89 -2.3
577,613 + CCNA_00562 0.90 -1.0
577,616 - CCNA_00562 0.90 -3.0
577,618 + -3.1
577,626 - -1.5
577,629 + -2.3
577,634 + -3.5
577,702 - +0.7
577,726 - +1.5
577,732 - +1.3
577,735 + +0.7
577,735 + +0.3
577,735 + -0.1
577,743 - -1.1
577,754 + +0.3
577,773 + +0.6
577,793 - +0.7
577,887 + CCNA_00563 0.23 -0.1
577,887 + CCNA_00563 0.23 -2.1
577,887 + CCNA_00563 0.23 -0.5
577,895 - CCNA_00563 0.24 -0.7
577,899 + CCNA_00563 0.24 +0.1
577,957 - CCNA_00563 0.32 -1.0
578,000 + CCNA_00563 0.38 +1.2
578,035 + CCNA_00563 0.43 -0.8
578,043 - CCNA_00563 0.44 +2.3
578,082 - CCNA_00563 0.49 -0.2
578,082 - CCNA_00563 0.49 -2.9
578,082 - CCNA_00563 0.49 +0.3
578,122 + CCNA_00563 0.54 +0.9
578,134 + CCNA_00563 0.56 -0.4
578,135 + CCNA_00563 0.56 +0.3
578,142 - CCNA_00563 0.57 -1.7
578,153 + CCNA_00563 0.59 +0.9
578,161 - CCNA_00563 0.60 +0.3
578,164 + CCNA_00563 0.60 -1.0
578,172 - CCNA_00563 0.61 -1.7
578,213 + CCNA_00563 0.67 -0.4
578,214 + CCNA_00563 0.67 +0.8
578,221 + CCNA_00563 0.68 +0.3
578,221 + CCNA_00563 0.68 -0.1
578,236 - CCNA_00563 0.70 +3.9
578,236 - CCNA_00563 0.70 -0.7
578,240 + CCNA_00563 0.70 -0.0
578,240 + CCNA_00563 0.70 -1.7
578,248 - CCNA_00563 0.72 -0.1
578,293 + CCNA_00563 0.78 -2.5
578,293 + CCNA_00563 0.78 -0.7
578,293 + CCNA_00563 0.78 +0.1
578,293 + CCNA_00563 0.78 -2.9
578,293 + CCNA_00563 0.78 -0.6
578,296 - CCNA_00563 0.78 -1.3
578,296 - CCNA_00563 0.78 +0.4
578,301 - CCNA_00563 0.79 -0.5
578,301 - CCNA_00563 0.79 +0.0
578,301 - CCNA_00563 0.79 -0.1
578,307 - CCNA_00563 0.80 -0.4
578,307 - +0.3
578,307 - CCNA_00563 0.80 -1.0
578,357 + CCNA_00563 0.86 +0.6
579,999 + +0.0
579,999 + +0.7
579,999 + -1.2
580,007 - -0.1
580,042 - -0.2
580,050 - +0.5
580,068 + -0.3
580,068 + -2.0
580,076 - +0.5
580,076 - -0.8
580,093 + -0.3
580,114 + -0.5
580,122 - +0.5
580,135 - +0.4
580,135 - +0.7
580,135 - +0.4
580,137 + -1.6
580,150 - +0.1
580,157 - +0.8
580,173 - +0.2
580,249 - CCNA_00565 0.12 -0.3
580,269 + CCNA_00565 0.13 -0.5
580,274 + CCNA_00565 0.14 +1.0
580,277 - CCNA_00565 0.14 -0.2
580,289 + CCNA_00565 0.15 -2.1
580,292 - CCNA_00565 0.15 +1.6
580,303 - CCNA_00565 0.15 +0.8
580,310 - CCNA_00565 0.16 +0.5
580,314 + CCNA_00565 0.16 -0.3
580,314 + CCNA_00565 0.16 -1.8
580,322 - CCNA_00565 0.16 -0.8
580,352 + CCNA_00565 0.18 +2.3
580,360 - CCNA_00565 0.19 +0.8
580,361 + CCNA_00565 0.19 +0.9
580,444 + CCNA_00565 0.23 -1.3
580,496 - CCNA_00565 0.26 -0.1
580,524 - CCNA_00565 0.28 +0.5
580,531 - CCNA_00565 0.28 +0.2
580,553 + CCNA_00565 0.30 +0.3
580,553 + CCNA_00565 0.30 +1.2
580,561 - CCNA_00565 0.30 +0.4
580,561 - CCNA_00565 0.30 +0.8
580,561 - CCNA_00565 0.30 +0.3
580,611 + CCNA_00565 0.33 -1.5
580,624 - CCNA_00565 0.34 +0.0
580,625 - CCNA_00565 0.34 +2.3
580,634 + CCNA_00565 0.34 +0.2
580,634 + CCNA_00565 0.34 -1.5
580,634 + CCNA_00565 0.34 +0.3
580,634 + CCNA_00565 0.34 -0.8
580,634 + CCNA_00565 0.34 -0.3
580,634 + CCNA_00565 0.34 -0.4
580,634 + CCNA_00565 0.34 +0.0
580,634 + CCNA_00565 0.34 -1.1
580,634 + CCNA_00565 0.34 -0.6
580,634 + CCNA_00565 0.34 -0.8
580,634 + CCNA_00565 0.34 -2.9
580,634 + CCNA_00565 0.34 +0.0
580,634 + CCNA_00565 0.34 -0.2
580,634 + CCNA_00565 0.34 +0.6
580,634 + CCNA_00565 0.34 -1.5
580,634 + CCNA_00565 0.34 -1.9
580,634 + CCNA_00565 0.34 -0.9
580,634 + CCNA_00565 0.34 -0.1
580,634 + CCNA_00565 0.34 -0.5
580,634 + CCNA_00565 0.34 -0.1
580,634 + CCNA_00565 0.34 -0.6
580,634 + CCNA_00565 0.34 +0.1
580,634 + CCNA_00565 0.34 -0.1
580,642 - CCNA_00565 0.35 +0.5
580,642 - CCNA_00565 0.35 +0.3
580,642 - CCNA_00565 0.35 -0.4
580,642 - CCNA_00565 0.35 -1.0
580,642 - CCNA_00565 0.35 -1.3
580,642 - CCNA_00565 0.35 -0.7
580,642 - CCNA_00565 0.35 +0.5
580,642 - CCNA_00565 0.35 -0.7
580,642 - CCNA_00565 0.35 -0.1
580,642 - CCNA_00565 0.35 -0.3
580,642 - CCNA_00565 0.35 +0.1
580,642 - CCNA_00565 0.35 +1.0
580,642 - CCNA_00565 0.35 +0.7
580,642 - CCNA_00565 0.35 +2.2
580,642 - CCNA_00565 0.35 -0.4
580,642 - CCNA_00565 0.35 +1.1
580,642 - CCNA_00565 0.35 +0.3
580,642 - CCNA_00565 0.35 -0.2
580,642 - CCNA_00565 0.35 -1.0
580,642 - CCNA_00565 0.35 +0.8
580,642 - CCNA_00565 0.35 +0.4
580,642 - CCNA_00565 0.35 -0.9
580,642 - CCNA_00565 0.35 -0.1
580,642 - CCNA_00565 0.35 -0.0
580,642 - CCNA_00565 0.35 +0.4
580,642 - CCNA_00565 0.35 +0.0
580,783 - CCNA_00565 0.43 -0.4
580,787 + CCNA_00565 0.43 -1.4
580,793 + CCNA_00565 0.43 -0.5
580,793 + CCNA_00565 0.43 +1.2
580,793 + CCNA_00565 0.43 -1.0
580,793 + CCNA_00565 0.43 -1.0
580,801 - CCNA_00565 0.44 -1.6
580,801 - CCNA_00565 0.44 +0.7
580,801 - CCNA_00565 0.44 -0.0
580,806 - CCNA_00565 0.44 -0.3
580,808 + CCNA_00565 0.44 +0.6
580,852 - CCNA_00565 0.47 -0.5
580,862 - CCNA_00565 0.47 -0.1
580,871 + CCNA_00565 0.48 -0.2
580,879 - CCNA_00565 0.48 -0.1
580,879 - CCNA_00565 0.48 +0.1
580,897 - CCNA_00565 0.49 +0.0
580,902 - CCNA_00565 0.50 -0.9
580,902 - CCNA_00565 0.50 +0.2
580,919 + CCNA_00565 0.51 +0.2
580,919 + CCNA_00565 0.51 +1.0
580,919 + CCNA_00565 0.51 +1.7
580,919 + CCNA_00565 0.51 -0.7
580,919 + CCNA_00565 0.51 +0.7
580,919 + CCNA_00565 0.51 +0.0
580,919 - CCNA_00565 0.51 +0.1
580,927 - CCNA_00565 0.51 +0.4
580,927 - CCNA_00565 0.51 -0.2
580,927 - CCNA_00565 0.51 -0.6
580,927 - CCNA_00565 0.51 +0.4
580,927 - CCNA_00565 0.51 -0.1
580,927 - CCNA_00565 0.51 +1.0
580,927 - CCNA_00565 0.51 -1.2
580,927 - CCNA_00565 0.51 -0.4
580,927 - CCNA_00565 0.51 -0.5
580,927 - CCNA_00565 0.51 -0.2
580,927 - CCNA_00565 0.51 -0.5
580,927 - CCNA_00565 0.51 -0.9
580,939 + CCNA_00565 0.52 -0.4
580,945 - CCNA_00565 0.52 +0.3
580,945 - CCNA_00565 0.52 -0.4
580,947 - CCNA_00565 0.52 -0.8
580,947 - CCNA_00565 0.52 +0.7
580,947 - CCNA_00565 0.52 +0.2
580,947 - CCNA_00565 0.52 -0.1
580,972 + CCNA_00565 0.54 -1.8

Or see this region's nucleotide sequence