Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09940

Experiment: Cytosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09935 and BWI76_RS09940 overlap by 11 nucleotidesBWI76_RS09940 and BWI76_RS09945 overlap by 1 nucleotidesBWI76_RS09945 and BWI76_RS09950 are separated by 256 nucleotides BWI76_RS09935: BWI76_RS09935 - paraquat-inducible membrane protein A, at 2,091,195 to 2,092,463 _RS09935 BWI76_RS09940: BWI76_RS09940 - paraquat-inducible protein B, at 2,092,453 to 2,094,090 _RS09940 BWI76_RS09945: BWI76_RS09945 - lipoprotein, at 2,094,090 to 2,094,653 _RS09945 BWI76_RS09950: BWI76_RS09950 - ribosome modulation factor, at 2,094,910 to 2,095,077 _RS09950 Position (kb) 2092 2093 2094 2095Strain fitness (log2 ratio) -3 -2 -1 0 1at 2091.477 kb on + strand, within BWI76_RS09935at 2091.625 kb on - strand, within BWI76_RS09935at 2091.988 kb on + strand, within BWI76_RS09935at 2092.204 kb on + strand, within BWI76_RS09935at 2092.218 kb on + strand, within BWI76_RS09935at 2092.591 kb on - strandat 2092.805 kb on - strand, within BWI76_RS09940at 2092.807 kb on + strand, within BWI76_RS09940at 2093.058 kb on + strand, within BWI76_RS09940at 2093.546 kb on + strand, within BWI76_RS09940at 2094.080 kb on - strandat 2094.589 kb on + strand, within BWI76_RS09945at 2094.599 kb on + strandat 2094.599 kb on + strandat 2094.607 kb on - strandat 2095.070 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
remove
2,091,477 + BWI76_RS09935 0.22 +0.5
2,091,625 - BWI76_RS09935 0.34 -1.3
2,091,988 + BWI76_RS09935 0.62 -0.1
2,092,204 + BWI76_RS09935 0.80 -0.0
2,092,218 + BWI76_RS09935 0.81 -2.7
2,092,591 - -0.9
2,092,805 - BWI76_RS09940 0.21 -0.3
2,092,807 + BWI76_RS09940 0.22 -1.4
2,093,058 + BWI76_RS09940 0.37 -3.2
2,093,546 + BWI76_RS09940 0.67 -1.4
2,094,080 - -2.2
2,094,589 + BWI76_RS09945 0.88 +0.2
2,094,599 + -0.7
2,094,599 + +0.6
2,094,607 - +1.2
2,095,070 - +0.3

Or see this region's nucleotide sequence