Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05980

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05970 and BWI76_RS05975 are separated by 107 nucleotidesBWI76_RS05975 and BWI76_RS05980 overlap by 8 nucleotidesBWI76_RS05980 and BWI76_RS05985 overlap by 14 nucleotides BWI76_RS05970: BWI76_RS05970 - hypothetical protein, at 1,253,745 to 1,253,927 _RS05970 BWI76_RS05975: BWI76_RS05975 - ABC transporter ATP-binding protein, at 1,254,035 to 1,254,730 _RS05975 BWI76_RS05980: BWI76_RS05980 - ABC transporter ATP-binding protein, at 1,254,723 to 1,255,505 _RS05980 BWI76_RS05985: BWI76_RS05985 - branched-chain amino acid ABC transporter permease, at 1,255,492 to 1,256,541 _RS05985 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -1 0 1 2 3at 1253.798 kb on + strand, within BWI76_RS05970at 1253.880 kb on - strand, within BWI76_RS05970at 1254.022 kb on + strandat 1254.030 kb on - strandat 1254.030 kb on - strandat 1254.030 kb on - strandat 1254.062 kb on - strandat 1254.255 kb on - strand, within BWI76_RS05975at 1254.403 kb on + strand, within BWI76_RS05975at 1254.411 kb on - strand, within BWI76_RS05975at 1254.432 kb on + strand, within BWI76_RS05975at 1254.675 kb on + strandat 1254.794 kb on - strandat 1254.816 kb on - strand, within BWI76_RS05980at 1254.856 kb on + strand, within BWI76_RS05980at 1255.055 kb on - strand, within BWI76_RS05980at 1255.099 kb on + strand, within BWI76_RS05980at 1255.099 kb on + strand, within BWI76_RS05980at 1255.182 kb on + strand, within BWI76_RS05980at 1255.338 kb on - strand, within BWI76_RS05980at 1255.352 kb on + strandat 1255.384 kb on + strand, within BWI76_RS05980at 1255.465 kb on + strandat 1255.831 kb on + strand, within BWI76_RS05985at 1256.049 kb on - strand, within BWI76_RS05985at 1256.193 kb on + strand, within BWI76_RS05985at 1256.366 kb on - strand, within BWI76_RS05985at 1256.382 kb on - strand, within BWI76_RS05985at 1256.441 kb on - strandat 1256.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,253,798 + BWI76_RS05970 0.29 -0.5
1,253,880 - BWI76_RS05970 0.74 -0.5
1,254,022 + +2.6
1,254,030 - +0.6
1,254,030 - +1.2
1,254,030 - +0.8
1,254,062 - -0.4
1,254,255 - BWI76_RS05975 0.32 -0.2
1,254,403 + BWI76_RS05975 0.53 +0.2
1,254,411 - BWI76_RS05975 0.54 -1.1
1,254,432 + BWI76_RS05975 0.57 -0.6
1,254,675 + +0.8
1,254,794 - -0.6
1,254,816 - BWI76_RS05980 0.12 +1.5
1,254,856 + BWI76_RS05980 0.17 +2.6
1,255,055 - BWI76_RS05980 0.42 +0.1
1,255,099 + BWI76_RS05980 0.48 +0.1
1,255,099 + BWI76_RS05980 0.48 +1.3
1,255,182 + BWI76_RS05980 0.59 +0.4
1,255,338 - BWI76_RS05980 0.79 +0.2
1,255,352 + +3.3
1,255,384 + BWI76_RS05980 0.84 +0.1
1,255,465 + +0.7
1,255,831 + BWI76_RS05985 0.32 +0.7
1,256,049 - BWI76_RS05985 0.53 -0.0
1,256,193 + BWI76_RS05985 0.67 -0.7
1,256,366 - BWI76_RS05985 0.83 +0.1
1,256,382 - BWI76_RS05985 0.85 +3.1
1,256,441 - +0.4
1,256,501 - -0.2

Or see this region's nucleotide sequence