Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05550

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05540 and BWI76_RS05545 are separated by 258 nucleotidesBWI76_RS05545 and BWI76_RS05550 are separated by 106 nucleotidesBWI76_RS05550 and BWI76_RS05555 are separated by 57 nucleotidesBWI76_RS05555 and BWI76_RS05560 are separated by 76 nucleotides BWI76_RS05540: BWI76_RS05540 - cytosol nonspecific dipeptidase, at 1,160,604 to 1,162,061 _RS05540 BWI76_RS05545: BWI76_RS05545 - xanthine phosphoribosyltransferase, at 1,162,320 to 1,162,778 _RS05545 BWI76_RS05550: BWI76_RS05550 - fermentation/respiration switch protein, at 1,162,885 to 1,164,129 _RS05550 BWI76_RS05555: BWI76_RS05555 - Crl family RNA polymerase assembly factor, at 1,164,187 to 1,164,585 _RS05555 BWI76_RS05560: BWI76_RS05560 - serine acetyltransferase, at 1,164,662 to 1,165,168 _RS05560 Position (kb) 1162 1163 1164 1165Strain fitness (log2 ratio) -3 -2 -1 0 1at 1161.948 kb on + strandat 1161.995 kb on + strandat 1162.151 kb on + strandat 1162.185 kb on + strandat 1162.193 kb on - strandat 1162.256 kb on - strandat 1162.302 kb on - strandat 1162.304 kb on + strandat 1162.312 kb on - strandat 1162.312 kb on - strandat 1162.314 kb on - strandat 1162.728 kb on - strand, within BWI76_RS05545at 1162.989 kb on - strandat 1163.186 kb on + strand, within BWI76_RS05550at 1163.257 kb on - strand, within BWI76_RS05550at 1163.370 kb on + strand, within BWI76_RS05550at 1163.542 kb on - strand, within BWI76_RS05550at 1163.577 kb on - strand, within BWI76_RS05550at 1163.607 kb on + strand, within BWI76_RS05550at 1163.768 kb on + strand, within BWI76_RS05550at 1163.776 kb on - strand, within BWI76_RS05550at 1163.776 kb on - strand, within BWI76_RS05550at 1163.928 kb on - strand, within BWI76_RS05550at 1163.958 kb on + strand, within BWI76_RS05550at 1164.077 kb on - strandat 1164.121 kb on - strandat 1164.167 kb on - strandat 1164.198 kb on - strandat 1164.207 kb on + strandat 1164.207 kb on + strandat 1164.215 kb on - strandat 1164.296 kb on + strand, within BWI76_RS05555at 1164.396 kb on - strand, within BWI76_RS05555

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,161,948 + -0.4
1,161,995 + -1.8
1,162,151 + -1.7
1,162,185 + -0.1
1,162,193 - +1.6
1,162,256 - +0.3
1,162,302 - +0.9
1,162,304 + -0.5
1,162,312 - -3.1
1,162,312 - -0.7
1,162,314 - -0.8
1,162,728 - BWI76_RS05545 0.89 -0.8
1,162,989 - -1.4
1,163,186 + BWI76_RS05550 0.24 -1.3
1,163,257 - BWI76_RS05550 0.30 -1.2
1,163,370 + BWI76_RS05550 0.39 -1.8
1,163,542 - BWI76_RS05550 0.53 +0.1
1,163,577 - BWI76_RS05550 0.56 +0.4
1,163,607 + BWI76_RS05550 0.58 +0.0
1,163,768 + BWI76_RS05550 0.71 +0.2
1,163,776 - BWI76_RS05550 0.72 -1.5
1,163,776 - BWI76_RS05550 0.72 -1.1
1,163,928 - BWI76_RS05550 0.84 +0.6
1,163,958 + BWI76_RS05550 0.86 -2.3
1,164,077 - +1.5
1,164,121 - +0.4
1,164,167 - -0.6
1,164,198 - -0.6
1,164,207 + +0.4
1,164,207 + -0.4
1,164,215 - -1.0
1,164,296 + BWI76_RS05555 0.27 +0.2
1,164,396 - BWI76_RS05555 0.52 -0.8

Or see this region's nucleotide sequence