Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05540 and BWI76_RS05545 are separated by 258 nucleotides BWI76_RS05545 and BWI76_RS05550 are separated by 106 nucleotides BWI76_RS05550 and BWI76_RS05555 are separated by 57 nucleotides BWI76_RS05555 and BWI76_RS05560 are separated by 76 nucleotides
BWI76_RS05540: BWI76_RS05540 - cytosol nonspecific dipeptidase, at 1,160,604 to 1,162,061
_RS05540
BWI76_RS05545: BWI76_RS05545 - xanthine phosphoribosyltransferase, at 1,162,320 to 1,162,778
_RS05545
BWI76_RS05550: BWI76_RS05550 - fermentation/respiration switch protein, at 1,162,885 to 1,164,129
_RS05550
BWI76_RS05555: BWI76_RS05555 - Crl family RNA polymerase assembly factor, at 1,164,187 to 1,164,585
_RS05555
BWI76_RS05560: BWI76_RS05560 - serine acetyltransferase, at 1,164,662 to 1,165,168
_RS05560
Position (kb)
1162
1163
1164
1165 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1161.948 kb on + strand at 1161.995 kb on + strand at 1162.151 kb on + strand at 1162.185 kb on + strand at 1162.193 kb on - strand at 1162.256 kb on - strand at 1162.302 kb on - strand at 1162.304 kb on + strand at 1162.312 kb on - strand at 1162.312 kb on - strand at 1162.314 kb on - strand at 1162.728 kb on - strand, within BWI76_RS05545 at 1162.989 kb on - strand at 1163.186 kb on + strand, within BWI76_RS05550 at 1163.257 kb on - strand, within BWI76_RS05550 at 1163.370 kb on + strand, within BWI76_RS05550 at 1163.542 kb on - strand, within BWI76_RS05550 at 1163.577 kb on - strand, within BWI76_RS05550 at 1163.607 kb on + strand, within BWI76_RS05550 at 1163.768 kb on + strand, within BWI76_RS05550 at 1163.776 kb on - strand, within BWI76_RS05550 at 1163.776 kb on - strand, within BWI76_RS05550 at 1163.928 kb on - strand, within BWI76_RS05550 at 1163.958 kb on + strand, within BWI76_RS05550 at 1164.077 kb on - strand at 1164.121 kb on - strand at 1164.167 kb on - strand at 1164.198 kb on - strand at 1164.207 kb on + strand at 1164.207 kb on + strand at 1164.215 kb on - strand at 1164.296 kb on + strand, within BWI76_RS05555 at 1164.396 kb on - strand, within BWI76_RS05555
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 1,161,948 + -0.4 1,161,995 + -1.8 1,162,151 + -1.7 1,162,185 + -0.1 1,162,193 - +1.6 1,162,256 - +0.3 1,162,302 - +0.9 1,162,304 + -0.5 1,162,312 - -3.1 1,162,312 - -0.7 1,162,314 - -0.8 1,162,728 - BWI76_RS05545 0.89 -0.8 1,162,989 - -1.4 1,163,186 + BWI76_RS05550 0.24 -1.3 1,163,257 - BWI76_RS05550 0.30 -1.2 1,163,370 + BWI76_RS05550 0.39 -1.8 1,163,542 - BWI76_RS05550 0.53 +0.1 1,163,577 - BWI76_RS05550 0.56 +0.4 1,163,607 + BWI76_RS05550 0.58 +0.0 1,163,768 + BWI76_RS05550 0.71 +0.2 1,163,776 - BWI76_RS05550 0.72 -1.5 1,163,776 - BWI76_RS05550 0.72 -1.1 1,163,928 - BWI76_RS05550 0.84 +0.6 1,163,958 + BWI76_RS05550 0.86 -2.3 1,164,077 - +1.5 1,164,121 - +0.4 1,164,167 - -0.6 1,164,198 - -0.6 1,164,207 + +0.4 1,164,207 + -0.4 1,164,215 - -1.0 1,164,296 + BWI76_RS05555 0.27 +0.2 1,164,396 - BWI76_RS05555 0.52 -0.8
Or see this region's nucleotide sequence