Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05540

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05530 and BWI76_RS05535 are separated by 2 nucleotidesBWI76_RS05535 and BWI76_RS05540 are separated by 111 nucleotidesBWI76_RS05540 and BWI76_RS05545 are separated by 258 nucleotidesBWI76_RS05545 and BWI76_RS05550 are separated by 106 nucleotides BWI76_RS05530: BWI76_RS05530 - DNA polymerase IV, at 1,158,943 to 1,159,998 _RS05530 BWI76_RS05535: BWI76_RS05535 - acyltransferase, at 1,160,001 to 1,160,492 _RS05535 BWI76_RS05540: BWI76_RS05540 - cytosol nonspecific dipeptidase, at 1,160,604 to 1,162,061 _RS05540 BWI76_RS05545: BWI76_RS05545 - xanthine phosphoribosyltransferase, at 1,162,320 to 1,162,778 _RS05545 BWI76_RS05550: BWI76_RS05550 - fermentation/respiration switch protein, at 1,162,885 to 1,164,129 _RS05550 Position (kb) 1160 1161 1162 1163Strain fitness (log2 ratio) -3 -2 -1 0 1at 1159.886 kb on - strand, within BWI76_RS05530at 1159.944 kb on + strandat 1159.969 kb on - strandat 1159.984 kb on + strandat 1159.991 kb on + strandat 1160.492 kb on + strandat 1160.586 kb on + strandat 1160.594 kb on - strandat 1160.644 kb on + strandat 1160.649 kb on + strandat 1160.649 kb on + strandat 1160.652 kb on - strandat 1160.715 kb on + strandat 1160.763 kb on + strand, within BWI76_RS05540at 1160.763 kb on + strand, within BWI76_RS05540at 1160.763 kb on + strand, within BWI76_RS05540at 1160.810 kb on - strand, within BWI76_RS05540at 1161.053 kb on + strand, within BWI76_RS05540at 1161.387 kb on + strand, within BWI76_RS05540at 1161.387 kb on + strand, within BWI76_RS05540at 1161.387 kb on + strand, within BWI76_RS05540at 1161.395 kb on - strand, within BWI76_RS05540at 1161.395 kb on - strand, within BWI76_RS05540at 1161.395 kb on - strand, within BWI76_RS05540at 1161.535 kb on + strand, within BWI76_RS05540at 1161.537 kb on - strand, within BWI76_RS05540at 1161.826 kb on + strand, within BWI76_RS05540at 1161.948 kb on + strandat 1161.995 kb on + strandat 1162.151 kb on + strandat 1162.185 kb on + strandat 1162.193 kb on - strandat 1162.256 kb on - strandat 1162.302 kb on - strandat 1162.304 kb on + strandat 1162.312 kb on - strandat 1162.312 kb on - strandat 1162.314 kb on - strandat 1162.728 kb on - strand, within BWI76_RS05545at 1162.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,159,886 - BWI76_RS05530 0.89 +0.4
1,159,944 + +0.2
1,159,969 - +0.6
1,159,984 + -0.0
1,159,991 + +0.5
1,160,492 + +0.2
1,160,586 + +0.2
1,160,594 - +0.1
1,160,644 + +1.0
1,160,649 + -3.1
1,160,649 + +0.2
1,160,652 - +0.1
1,160,715 + -0.8
1,160,763 + BWI76_RS05540 0.11 -0.8
1,160,763 + BWI76_RS05540 0.11 -1.3
1,160,763 + BWI76_RS05540 0.11 -1.4
1,160,810 - BWI76_RS05540 0.14 -3.2
1,161,053 + BWI76_RS05540 0.31 +0.0
1,161,387 + BWI76_RS05540 0.54 +1.6
1,161,387 + BWI76_RS05540 0.54 +1.3
1,161,387 + BWI76_RS05540 0.54 -0.8
1,161,395 - BWI76_RS05540 0.54 -0.1
1,161,395 - BWI76_RS05540 0.54 -0.3
1,161,395 - BWI76_RS05540 0.54 -1.0
1,161,535 + BWI76_RS05540 0.64 -0.1
1,161,537 - BWI76_RS05540 0.64 +0.4
1,161,826 + BWI76_RS05540 0.84 -2.4
1,161,948 + -0.4
1,161,995 + -1.8
1,162,151 + -1.7
1,162,185 + -0.1
1,162,193 - +1.6
1,162,256 - +0.3
1,162,302 - +0.9
1,162,304 + -0.5
1,162,312 - -3.1
1,162,312 - -0.7
1,162,314 - -0.8
1,162,728 - BWI76_RS05545 0.89 -0.8
1,162,989 - -1.4

Or see this region's nucleotide sequence