Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04435

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04430 and BWI76_RS04435 are separated by 278 nucleotidesBWI76_RS04435 and BWI76_RS04440 are separated by 31 nucleotidesBWI76_RS04440 and BWI76_RS04445 overlap by 4 nucleotides BWI76_RS04430: BWI76_RS04430 - citrate carrier protein, at 914,716 to 916,056 _RS04430 BWI76_RS04435: BWI76_RS04435 - [citrate (pro-3S)-lyase] ligase, at 916,335 to 917,363 _RS04435 BWI76_RS04440: BWI76_RS04440 - citrate lyase ACP, at 917,395 to 917,688 _RS04440 BWI76_RS04445: BWI76_RS04445 - citrate (pro-3S)-lyase subunit beta, at 917,685 to 918,554 _RS04445 Position (kb) 916 917 918Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 915.342 kb on - strand, within BWI76_RS04430at 915.389 kb on + strand, within BWI76_RS04430at 915.397 kb on - strand, within BWI76_RS04430at 915.400 kb on + strand, within BWI76_RS04430at 915.406 kb on + strand, within BWI76_RS04430at 915.411 kb on + strandat 915.423 kb on + strand, within BWI76_RS04430at 915.423 kb on + strand, within BWI76_RS04430at 915.425 kb on + strand, within BWI76_RS04430at 915.430 kb on + strand, within BWI76_RS04430at 915.431 kb on - strand, within BWI76_RS04430at 915.431 kb on - strand, within BWI76_RS04430at 915.438 kb on - strand, within BWI76_RS04430at 915.478 kb on + strand, within BWI76_RS04430at 915.497 kb on - strand, within BWI76_RS04430at 915.497 kb on - strand, within BWI76_RS04430at 915.531 kb on - strand, within BWI76_RS04430at 915.532 kb on - strand, within BWI76_RS04430at 915.532 kb on - strand, within BWI76_RS04430at 915.534 kb on - strand, within BWI76_RS04430at 915.557 kb on - strand, within BWI76_RS04430at 915.571 kb on + strand, within BWI76_RS04430at 915.576 kb on - strand, within BWI76_RS04430at 915.579 kb on - strand, within BWI76_RS04430at 915.589 kb on - strand, within BWI76_RS04430at 915.601 kb on - strand, within BWI76_RS04430at 915.601 kb on - strand, within BWI76_RS04430at 915.621 kb on + strand, within BWI76_RS04430at 915.629 kb on - strand, within BWI76_RS04430at 915.629 kb on - strand, within BWI76_RS04430at 915.629 kb on - strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.658 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.680 kb on + strand, within BWI76_RS04430at 915.698 kb on + strand, within BWI76_RS04430at 915.741 kb on + strand, within BWI76_RS04430at 915.741 kb on + strand, within BWI76_RS04430at 915.756 kb on + strand, within BWI76_RS04430at 915.799 kb on + strand, within BWI76_RS04430at 915.818 kb on + strand, within BWI76_RS04430at 915.892 kb on - strand, within BWI76_RS04430at 915.895 kb on + strand, within BWI76_RS04430at 915.915 kb on + strand, within BWI76_RS04430at 915.923 kb on - strandat 915.954 kb on + strandat 915.954 kb on + strandat 915.957 kb on - strandat 915.961 kb on + strandat 915.961 kb on + strandat 915.961 kb on + strandat 915.961 kb on + strandat 915.961 kb on + strandat 915.962 kb on - strandat 915.969 kb on - strandat 915.969 kb on - strandat 915.969 kb on - strandat 915.970 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.044 kb on - strandat 916.068 kb on - strandat 916.238 kb on + strandat 916.294 kb on + strandat 916.294 kb on + strandat 916.303 kb on - strandat 916.389 kb on + strandat 916.390 kb on + strandat 916.390 kb on - strandat 916.397 kb on + strandat 916.398 kb on - strandat 916.418 kb on + strandat 916.418 kb on + strandat 916.426 kb on - strandat 916.438 kb on + strand, within BWI76_RS04435at 916.461 kb on + strand, within BWI76_RS04435at 916.503 kb on + strand, within BWI76_RS04435at 916.503 kb on + strand, within BWI76_RS04435at 916.526 kb on - strand, within BWI76_RS04435at 916.552 kb on + strand, within BWI76_RS04435at 916.552 kb on + strand, within BWI76_RS04435at 916.560 kb on - strand, within BWI76_RS04435at 916.560 kb on - strand, within BWI76_RS04435at 916.565 kb on + strand, within BWI76_RS04435at 916.571 kb on + strand, within BWI76_RS04435at 916.585 kb on + strand, within BWI76_RS04435at 916.830 kb on - strand, within BWI76_RS04435at 917.148 kb on - strand, within BWI76_RS04435at 917.237 kb on + strand, within BWI76_RS04435at 917.418 kb on + strandat 917.461 kb on - strand, within BWI76_RS04440at 917.559 kb on + strand, within BWI76_RS04440at 917.615 kb on - strand, within BWI76_RS04440at 917.653 kb on + strand, within BWI76_RS04440at 917.759 kb on - strandat 917.935 kb on + strand, within BWI76_RS04445at 918.031 kb on + strand, within BWI76_RS04445at 918.031 kb on + strand, within BWI76_RS04445at 918.046 kb on + strand, within BWI76_RS04445

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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915,342 - BWI76_RS04430 0.47 +0.6
915,389 + BWI76_RS04430 0.50 -1.0
915,397 - BWI76_RS04430 0.51 +0.6
915,400 + BWI76_RS04430 0.51 +0.7
915,406 + BWI76_RS04430 0.51 -0.4
915,411 + +0.0
915,423 + BWI76_RS04430 0.53 +0.4
915,423 + BWI76_RS04430 0.53 -0.9
915,425 + BWI76_RS04430 0.53 -2.8
915,430 + BWI76_RS04430 0.53 +2.6
915,431 - BWI76_RS04430 0.53 -3.3
915,431 - BWI76_RS04430 0.53 +0.0
915,438 - BWI76_RS04430 0.54 -2.2
915,478 + BWI76_RS04430 0.57 -2.6
915,497 - BWI76_RS04430 0.58 -0.3
915,497 - BWI76_RS04430 0.58 -2.4
915,531 - BWI76_RS04430 0.61 -0.1
915,532 - BWI76_RS04430 0.61 +0.3
915,532 - BWI76_RS04430 0.61 -0.7
915,534 - BWI76_RS04430 0.61 +0.1
915,557 - BWI76_RS04430 0.63 +0.0
915,571 + BWI76_RS04430 0.64 -1.3
915,576 - BWI76_RS04430 0.64 +0.1
915,579 - BWI76_RS04430 0.64 +1.6
915,589 - BWI76_RS04430 0.65 +0.0
915,601 - BWI76_RS04430 0.66 +0.4
915,601 - BWI76_RS04430 0.66 +0.7
915,621 + BWI76_RS04430 0.67 -1.1
915,629 - BWI76_RS04430 0.68 -1.0
915,629 - BWI76_RS04430 0.68 +1.0
915,629 - BWI76_RS04430 0.68 -0.4
915,651 + BWI76_RS04430 0.70 -2.4
915,651 + BWI76_RS04430 0.70 -1.4
915,651 + BWI76_RS04430 0.70 -1.0
915,651 + BWI76_RS04430 0.70 -0.9
915,651 + BWI76_RS04430 0.70 +0.5
915,651 + BWI76_RS04430 0.70 -0.4
915,651 + BWI76_RS04430 0.70 -0.7
915,651 + BWI76_RS04430 0.70 -1.9
915,651 + BWI76_RS04430 0.70 -1.0
915,651 + BWI76_RS04430 0.70 -1.3
915,651 + BWI76_RS04430 0.70 +0.2
915,651 + BWI76_RS04430 0.70 -0.3
915,651 + BWI76_RS04430 0.70 -0.6
915,658 - BWI76_RS04430 0.70 +0.3
915,659 - BWI76_RS04430 0.70 -1.3
915,659 - BWI76_RS04430 0.70 -1.0
915,659 - BWI76_RS04430 0.70 -0.6
915,659 - BWI76_RS04430 0.70 -1.1
915,659 - BWI76_RS04430 0.70 -1.1
915,680 + BWI76_RS04430 0.72 -3.6
915,698 + BWI76_RS04430 0.73 +1.0
915,741 + BWI76_RS04430 0.76 -0.5
915,741 + BWI76_RS04430 0.76 +1.0
915,756 + BWI76_RS04430 0.78 +2.0
915,799 + BWI76_RS04430 0.81 -2.5
915,818 + BWI76_RS04430 0.82 -1.6
915,892 - BWI76_RS04430 0.88 +1.9
915,895 + BWI76_RS04430 0.88 -2.7
915,915 + BWI76_RS04430 0.89 +0.1
915,923 - -0.7
915,954 + +0.4
915,954 + -0.1
915,957 - -2.6
915,961 + -0.5
915,961 + -1.6
915,961 + +1.0
915,961 + -0.4
915,961 + -1.3
915,962 - +0.5
915,969 - +1.0
915,969 - -1.2
915,969 - -0.3
915,970 - -1.2
916,039 - +0.8
916,039 - +0.6
916,039 - +0.1
916,039 - -1.4
916,039 - +0.5
916,039 - +1.5
916,044 - +0.5
916,068 - +3.2
916,238 + +2.2
916,294 + -1.8
916,294 + +0.6
916,303 - +1.8
916,389 + -1.0
916,390 + -0.4
916,390 - -1.2
916,397 + -3.2
916,398 - +2.0
916,418 + +0.0
916,418 + +0.5
916,426 - +0.3
916,438 + BWI76_RS04435 0.10 -2.0
916,461 + BWI76_RS04435 0.12 -0.8
916,503 + BWI76_RS04435 0.16 +0.2
916,503 + BWI76_RS04435 0.16 -0.3
916,526 - BWI76_RS04435 0.19 -0.4
916,552 + BWI76_RS04435 0.21 -1.6
916,552 + BWI76_RS04435 0.21 +0.1
916,560 - BWI76_RS04435 0.22 -1.4
916,560 - BWI76_RS04435 0.22 +0.9
916,565 + BWI76_RS04435 0.22 +0.3
916,571 + BWI76_RS04435 0.23 -3.9
916,585 + BWI76_RS04435 0.24 -2.2
916,830 - BWI76_RS04435 0.48 +0.2
917,148 - BWI76_RS04435 0.79 -0.5
917,237 + BWI76_RS04435 0.88 -0.1
917,418 + -1.4
917,461 - BWI76_RS04440 0.22 +0.8
917,559 + BWI76_RS04440 0.56 +0.1
917,615 - BWI76_RS04440 0.75 -0.2
917,653 + BWI76_RS04440 0.88 +0.1
917,759 - -0.3
917,935 + BWI76_RS04445 0.29 -1.0
918,031 + BWI76_RS04445 0.40 +0.8
918,031 + BWI76_RS04445 0.40 -0.4
918,046 + BWI76_RS04445 0.41 -1.2

Or see this region's nucleotide sequence