Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004587

Experiment: Lumichrome (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004585 and ABIE53_004586 are separated by 150 nucleotidesABIE53_004586 and ABIE53_004587 are separated by 120 nucleotidesABIE53_004587 and ABIE53_004588 are separated by 222 nucleotides ABIE53_004585: ABIE53_004585 - hypothetical protein, at 769,755 to 770,372 _004585 ABIE53_004586: ABIE53_004586 - ribosomal protein S18 acetylase RimI-like enzyme, at 770,523 to 770,996 _004586 ABIE53_004587: ABIE53_004587 - hypothetical protein, at 771,117 to 771,434 _004587 ABIE53_004588: ABIE53_004588 - aryl-alcohol dehydrogenase-like predicted oxidoreductase, at 771,657 to 772,652 _004588 Position (kb) 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 770.142 kb on + strand, within ABIE53_004585at 770.142 kb on + strand, within ABIE53_004585at 770.208 kb on + strand, within ABIE53_004585at 770.208 kb on + strand, within ABIE53_004585at 770.208 kb on + strand, within ABIE53_004585at 770.208 kb on + strand, within ABIE53_004585at 770.209 kb on - strand, within ABIE53_004585at 770.209 kb on - strand, within ABIE53_004585at 770.290 kb on + strand, within ABIE53_004585at 770.290 kb on + strand, within ABIE53_004585at 770.290 kb on + strand, within ABIE53_004585at 770.290 kb on + strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.303 kb on + strand, within ABIE53_004585at 770.303 kb on + strand, within ABIE53_004585at 770.304 kb on - strand, within ABIE53_004585at 770.304 kb on - strand, within ABIE53_004585at 770.354 kb on + strandat 770.402 kb on + strandat 770.402 kb on + strandat 770.403 kb on - strandat 770.403 kb on - strandat 770.403 kb on - strandat 770.452 kb on + strandat 770.491 kb on + strandat 770.491 kb on + strandat 770.491 kb on + strandat 770.492 kb on - strandat 770.492 kb on - strandat 770.679 kb on + strand, within ABIE53_004586at 770.679 kb on + strand, within ABIE53_004586at 770.679 kb on + strand, within ABIE53_004586at 770.679 kb on + strand, within ABIE53_004586at 770.902 kb on - strand, within ABIE53_004586at 771.006 kb on - strandat 771.006 kb on - strandat 771.101 kb on + strandat 771.129 kb on - strandat 771.129 kb on - strandat 771.130 kb on + strandat 771.131 kb on - strandat 771.165 kb on - strand, within ABIE53_004587at 771.165 kb on - strand, within ABIE53_004587at 771.179 kb on + strand, within ABIE53_004587at 771.179 kb on + strand, within ABIE53_004587at 771.179 kb on + strand, within ABIE53_004587at 771.179 kb on + strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.190 kb on + strand, within ABIE53_004587at 771.190 kb on + strand, within ABIE53_004587at 771.191 kb on - strand, within ABIE53_004587at 771.191 kb on - strand, within ABIE53_004587at 771.250 kb on + strand, within ABIE53_004587at 771.250 kb on + strand, within ABIE53_004587at 771.250 kb on + strand, within ABIE53_004587at 771.251 kb on - strand, within ABIE53_004587at 771.259 kb on + strand, within ABIE53_004587at 771.259 kb on + strand, within ABIE53_004587at 771.259 kb on + strand, within ABIE53_004587at 771.293 kb on + strand, within ABIE53_004587at 771.293 kb on + strand, within ABIE53_004587at 771.294 kb on - strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.296 kb on - strand, within ABIE53_004587at 771.296 kb on - strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.334 kb on - strand, within ABIE53_004587at 771.334 kb on - strand, within ABIE53_004587at 771.334 kb on - strand, within ABIE53_004587at 771.409 kb on - strandat 771.498 kb on + strandat 771.498 kb on + strandat 771.539 kb on + strandat 771.540 kb on - strandat 771.540 kb on - strandat 771.540 kb on - strandat 771.592 kb on - strandat 771.592 kb on - strandat 771.813 kb on + strand, within ABIE53_004588at 772.011 kb on + strand, within ABIE53_004588at 772.011 kb on + strand, within ABIE53_004588at 772.012 kb on - strand, within ABIE53_004588at 772.012 kb on - strand, within ABIE53_004588at 772.012 kb on - strand, within ABIE53_004588at 772.012 kb on - strand, within ABIE53_004588at 772.012 kb on - strand, within ABIE53_004588at 772.023 kb on + strand, within ABIE53_004588at 772.023 kb on + strand, within ABIE53_004588at 772.023 kb on + strand, within ABIE53_004588at 772.023 kb on + strand, within ABIE53_004588at 772.024 kb on - strand, within ABIE53_004588at 772.024 kb on - strand, within ABIE53_004588at 772.024 kb on - strand, within ABIE53_004588at 772.024 kb on - strand, within ABIE53_004588at 772.024 kb on - strand, within ABIE53_004588at 772.110 kb on + strand, within ABIE53_004588at 772.111 kb on - strand, within ABIE53_004588at 772.111 kb on - strand, within ABIE53_004588at 772.111 kb on - strand, within ABIE53_004588at 772.111 kb on - strand, within ABIE53_004588at 772.111 kb on - strand, within ABIE53_004588at 772.209 kb on + strand, within ABIE53_004588at 772.210 kb on - strand, within ABIE53_004588at 772.210 kb on - strand, within ABIE53_004588at 772.210 kb on - strand, within ABIE53_004588at 772.211 kb on + strand, within ABIE53_004588at 772.211 kb on + strand, within ABIE53_004588at 772.212 kb on - strand, within ABIE53_004588at 772.212 kb on - strand, within ABIE53_004588at 772.284 kb on + strand, within ABIE53_004588at 772.284 kb on + strand, within ABIE53_004588at 772.284 kb on + strand, within ABIE53_004588at 772.284 kb on + strand, within ABIE53_004588at 772.285 kb on - strand, within ABIE53_004588at 772.285 kb on - strand, within ABIE53_004588at 772.285 kb on - strand, within ABIE53_004588at 772.386 kb on + strand, within ABIE53_004588at 772.386 kb on + strand, within ABIE53_004588at 772.386 kb on + strand, within ABIE53_004588at 772.387 kb on - strand, within ABIE53_004588at 772.387 kb on - strand, within ABIE53_004588at 772.387 kb on - strand, within ABIE53_004588at 772.398 kb on + strand, within ABIE53_004588at 772.399 kb on - strand, within ABIE53_004588

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Per-strain Table

Position Strand Gene LocusTag Fraction Lumichrome (C)
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770,142 + ABIE53_004585 0.63 -1.0
770,142 + ABIE53_004585 0.63 +1.9
770,208 + ABIE53_004585 0.73 -0.5
770,208 + ABIE53_004585 0.73 -1.3
770,208 + ABIE53_004585 0.73 +0.3
770,208 + ABIE53_004585 0.73 -0.2
770,209 - ABIE53_004585 0.73 +1.1
770,209 - ABIE53_004585 0.73 +1.1
770,290 + ABIE53_004585 0.87 +0.2
770,290 + ABIE53_004585 0.87 -0.0
770,290 + ABIE53_004585 0.87 -0.6
770,290 + ABIE53_004585 0.87 +0.6
770,291 - ABIE53_004585 0.87 +0.1
770,291 - ABIE53_004585 0.87 +0.2
770,291 - ABIE53_004585 0.87 +1.9
770,291 - ABIE53_004585 0.87 -1.6
770,291 - ABIE53_004585 0.87 -0.3
770,291 - ABIE53_004585 0.87 -2.5
770,303 + ABIE53_004585 0.89 +0.7
770,303 + ABIE53_004585 0.89 +0.3
770,304 - ABIE53_004585 0.89 +0.5
770,304 - ABIE53_004585 0.89 +0.2
770,354 + -1.1
770,402 + +1.5
770,402 + +1.2
770,403 - +1.3
770,403 - +1.5
770,403 - +0.8
770,452 + +0.6
770,491 + +0.7
770,491 + -0.5
770,491 + +0.1
770,492 - +0.5
770,492 - -0.5
770,679 + ABIE53_004586 0.33 +0.5
770,679 + ABIE53_004586 0.33 +0.5
770,679 + ABIE53_004586 0.33 -0.8
770,679 + ABIE53_004586 0.33 +1.1
770,902 - ABIE53_004586 0.80 -0.3
771,006 - +2.1
771,006 - -0.0
771,101 + -0.7
771,129 - -2.5
771,129 - +1.1
771,130 + -0.8
771,131 - +0.5
771,165 - ABIE53_004587 0.15 -0.3
771,165 - ABIE53_004587 0.15 -0.2
771,179 + ABIE53_004587 0.19 +0.0
771,179 + ABIE53_004587 0.19 +0.1
771,179 + ABIE53_004587 0.19 -0.2
771,179 + ABIE53_004587 0.19 -0.6
771,180 - ABIE53_004587 0.20 +0.8
771,180 - ABIE53_004587 0.20 -0.1
771,180 - ABIE53_004587 0.20 -0.5
771,180 - ABIE53_004587 0.20 -0.5
771,180 - ABIE53_004587 0.20 +1.5
771,180 - ABIE53_004587 0.20 +0.4
771,180 - ABIE53_004587 0.20 +0.0
771,180 - ABIE53_004587 0.20 -1.0
771,190 + ABIE53_004587 0.23 -0.4
771,190 + ABIE53_004587 0.23 +1.4
771,191 - ABIE53_004587 0.23 -0.2
771,191 - ABIE53_004587 0.23 +0.1
771,250 + ABIE53_004587 0.42 -0.2
771,250 + ABIE53_004587 0.42 -1.3
771,250 + ABIE53_004587 0.42 -0.9
771,251 - ABIE53_004587 0.42 -0.0
771,259 + ABIE53_004587 0.45 +0.6
771,259 + ABIE53_004587 0.45 -1.3
771,259 + ABIE53_004587 0.45 -0.8
771,293 + ABIE53_004587 0.55 +0.4
771,293 + ABIE53_004587 0.55 -0.1
771,294 - ABIE53_004587 0.56 -1.2
771,295 + ABIE53_004587 0.56 -1.3
771,295 + ABIE53_004587 0.56 -0.4
771,295 + ABIE53_004587 0.56 -0.9
771,295 + ABIE53_004587 0.56 -0.5
771,295 + ABIE53_004587 0.56 -0.5
771,296 - ABIE53_004587 0.56 +0.3
771,296 - ABIE53_004587 0.56 -1.3
771,333 + ABIE53_004587 0.68 -0.0
771,333 + ABIE53_004587 0.68 +0.2
771,333 + ABIE53_004587 0.68 -0.0
771,333 + ABIE53_004587 0.68 +0.4
771,333 + ABIE53_004587 0.68 +0.2
771,333 + ABIE53_004587 0.68 -1.1
771,333 + ABIE53_004587 0.68 -0.4
771,334 - ABIE53_004587 0.68 -1.3
771,334 - ABIE53_004587 0.68 -0.0
771,334 - ABIE53_004587 0.68 -1.2
771,409 - -0.7
771,498 + -0.4
771,498 + -1.5
771,539 + -0.9
771,540 - +0.5
771,540 - -2.5
771,540 - -0.0
771,592 - +1.0
771,592 - -0.6
771,813 + ABIE53_004588 0.16 -0.3
772,011 + ABIE53_004588 0.36 -0.8
772,011 + ABIE53_004588 0.36 +0.6
772,012 - ABIE53_004588 0.36 -0.8
772,012 - ABIE53_004588 0.36 -0.4
772,012 - ABIE53_004588 0.36 +0.4
772,012 - ABIE53_004588 0.36 +0.1
772,012 - ABIE53_004588 0.36 +1.2
772,023 + ABIE53_004588 0.37 -0.8
772,023 + ABIE53_004588 0.37 +0.5
772,023 + ABIE53_004588 0.37 -0.5
772,023 + ABIE53_004588 0.37 +0.5
772,024 - ABIE53_004588 0.37 -0.4
772,024 - ABIE53_004588 0.37 -0.2
772,024 - ABIE53_004588 0.37 -0.0
772,024 - ABIE53_004588 0.37 -0.6
772,024 - ABIE53_004588 0.37 -2.0
772,110 + ABIE53_004588 0.45 +1.5
772,111 - ABIE53_004588 0.46 -0.0
772,111 - ABIE53_004588 0.46 +0.1
772,111 - ABIE53_004588 0.46 +0.2
772,111 - ABIE53_004588 0.46 -3.5
772,111 - ABIE53_004588 0.46 -0.5
772,209 + ABIE53_004588 0.55 -0.9
772,210 - ABIE53_004588 0.56 -1.9
772,210 - ABIE53_004588 0.56 -0.2
772,210 - ABIE53_004588 0.56 +0.5
772,211 + ABIE53_004588 0.56 +0.7
772,211 + ABIE53_004588 0.56 +0.5
772,212 - ABIE53_004588 0.56 +1.0
772,212 - ABIE53_004588 0.56 -0.4
772,284 + ABIE53_004588 0.63 +0.5
772,284 + ABIE53_004588 0.63 +0.2
772,284 + ABIE53_004588 0.63 -0.6
772,284 + ABIE53_004588 0.63 +1.4
772,285 - ABIE53_004588 0.63 +0.5
772,285 - ABIE53_004588 0.63 +0.7
772,285 - ABIE53_004588 0.63 +0.3
772,386 + ABIE53_004588 0.73 +1.0
772,386 + ABIE53_004588 0.73 +0.0
772,386 + ABIE53_004588 0.73 -1.2
772,387 - ABIE53_004588 0.73 -0.4
772,387 - ABIE53_004588 0.73 +0.0
772,387 - ABIE53_004588 0.73 -0.5
772,398 + ABIE53_004588 0.74 -1.9
772,399 - ABIE53_004588 0.74 -1.9

Or see this region's nucleotide sequence