Experiment: Lumichrome (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004220 and ABIE53_004221 are separated by 48 nucleotides ABIE53_004221 and ABIE53_004222 overlap by 4 nucleotides ABIE53_004222 and ABIE53_004223 are separated by 84 nucleotides
ABIE53_004220: ABIE53_004220 - membrane protein, at 394,493 to 395,431
_004220
ABIE53_004221: ABIE53_004221 - NitT/TauT family transport system permease protein, at 395,480 to 396,358
_004221
ABIE53_004222: ABIE53_004222 - NitT/TauT family transport system ATP-binding protein, at 396,355 to 397,194
_004222
ABIE53_004223: ABIE53_004223 - NitT/TauT family transport system substrate-binding protein, at 397,279 to 398,340
_004223
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 394.493 kb on - strand at 394.493 kb on - strand at 394.629 kb on - strand, within ABIE53_004220 at 394.629 kb on - strand, within ABIE53_004220 at 394.738 kb on + strand, within ABIE53_004220 at 394.738 kb on + strand, within ABIE53_004220 at 394.862 kb on - strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.931 kb on - strand, within ABIE53_004220 at 394.931 kb on - strand, within ABIE53_004220 at 394.931 kb on - strand, within ABIE53_004220 at 395.234 kb on + strand, within ABIE53_004220 at 395.234 kb on + strand, within ABIE53_004220 at 395.234 kb on + strand, within ABIE53_004220 at 395.307 kb on - strand, within ABIE53_004220 at 395.374 kb on - strand at 395.481 kb on + strand at 395.481 kb on + strand at 395.481 kb on + strand at 395.525 kb on - strand at 395.525 kb on - strand at 395.598 kb on + strand, within ABIE53_004221 at 395.598 kb on + strand, within ABIE53_004221 at 395.599 kb on - strand, within ABIE53_004221 at 395.626 kb on - strand, within ABIE53_004221 at 395.762 kb on + strand, within ABIE53_004221 at 395.763 kb on - strand, within ABIE53_004221 at 395.787 kb on + strand, within ABIE53_004221 at 395.787 kb on + strand, within ABIE53_004221 at 395.839 kb on - strand, within ABIE53_004221 at 395.839 kb on - strand, within ABIE53_004221 at 395.839 kb on - strand, within ABIE53_004221 at 396.049 kb on + strand, within ABIE53_004221 at 396.194 kb on + strand, within ABIE53_004221 at 396.313 kb on + strand at 396.316 kb on - strand at 396.337 kb on + strand at 396.338 kb on + strand at 396.396 kb on + strand at 396.396 kb on + strand at 396.396 kb on + strand at 396.397 kb on - strand at 396.397 kb on - strand at 396.446 kb on + strand, within ABIE53_004222 at 396.446 kb on + strand, within ABIE53_004222 at 396.447 kb on - strand, within ABIE53_004222 at 396.447 kb on - strand, within ABIE53_004222 at 396.517 kb on + strand, within ABIE53_004222 at 396.518 kb on - strand, within ABIE53_004222 at 396.653 kb on - strand, within ABIE53_004222 at 396.653 kb on - strand, within ABIE53_004222 at 396.764 kb on + strand, within ABIE53_004222 at 396.764 kb on + strand, within ABIE53_004222 at 396.764 kb on + strand, within ABIE53_004222 at 396.765 kb on - strand, within ABIE53_004222 at 396.765 kb on - strand, within ABIE53_004222 at 396.880 kb on + strand, within ABIE53_004222 at 396.880 kb on + strand, within ABIE53_004222 at 397.085 kb on + strand, within ABIE53_004222 at 397.258 kb on + strand at 397.317 kb on - strand at 397.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lumichrome (C) remove 394,493 - -0.6 394,493 - +1.5 394,629 - ABIE53_004220 0.14 -0.5 394,629 - ABIE53_004220 0.14 -0.2 394,738 + ABIE53_004220 0.26 -1.3 394,738 + ABIE53_004220 0.26 +1.5 394,862 - ABIE53_004220 0.39 -1.2 394,930 + ABIE53_004220 0.47 +2.1 394,930 + ABIE53_004220 0.47 +0.4 394,930 + ABIE53_004220 0.47 +0.8 394,930 + ABIE53_004220 0.47 -0.6 394,930 + ABIE53_004220 0.47 -0.5 394,930 + ABIE53_004220 0.47 -0.8 394,931 - ABIE53_004220 0.47 -1.1 394,931 - ABIE53_004220 0.47 -0.1 394,931 - ABIE53_004220 0.47 -0.1 395,234 + ABIE53_004220 0.79 -1.1 395,234 + ABIE53_004220 0.79 +0.2 395,234 + ABIE53_004220 0.79 -1.3 395,307 - ABIE53_004220 0.87 -1.3 395,374 - +1.3 395,481 + -0.8 395,481 + -2.2 395,481 + -1.4 395,525 - +1.1 395,525 - +0.9 395,598 + ABIE53_004221 0.13 -1.2 395,598 + ABIE53_004221 0.13 -0.7 395,599 - ABIE53_004221 0.14 -0.7 395,626 - ABIE53_004221 0.17 +2.5 395,762 + ABIE53_004221 0.32 -0.5 395,763 - ABIE53_004221 0.32 +0.9 395,787 + ABIE53_004221 0.35 +0.8 395,787 + ABIE53_004221 0.35 -0.5 395,839 - ABIE53_004221 0.41 -1.3 395,839 - ABIE53_004221 0.41 -1.4 395,839 - ABIE53_004221 0.41 +0.8 396,049 + ABIE53_004221 0.65 -1.3 396,194 + ABIE53_004221 0.81 -0.8 396,313 + -0.4 396,316 - +0.0 396,337 + +0.4 396,338 + -0.5 396,396 + -1.1 396,396 + -0.1 396,396 + -1.6 396,397 - +1.5 396,397 - +3.1 396,446 + ABIE53_004222 0.11 -0.1 396,446 + ABIE53_004222 0.11 +0.2 396,447 - ABIE53_004222 0.11 +0.6 396,447 - ABIE53_004222 0.11 -0.9 396,517 + ABIE53_004222 0.19 -0.6 396,518 - ABIE53_004222 0.19 -0.5 396,653 - ABIE53_004222 0.35 +0.6 396,653 - ABIE53_004222 0.35 +1.1 396,764 + ABIE53_004222 0.49 -0.8 396,764 + ABIE53_004222 0.49 -1.3 396,764 + ABIE53_004222 0.49 +0.4 396,765 - ABIE53_004222 0.49 -0.3 396,765 - ABIE53_004222 0.49 -0.8 396,880 + ABIE53_004222 0.62 -1.6 396,880 + ABIE53_004222 0.62 -0.7 397,085 + ABIE53_004222 0.87 -1.3 397,258 + +0.4 397,317 - +1.5 397,317 - -0.6
Or see this region's nucleotide sequence