Experiment: Lumichrome (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004030 and ABIE53_004031 are separated by 61 nucleotides ABIE53_004031 and ABIE53_004032 are separated by 60 nucleotides ABIE53_004032 and ABIE53_004033 overlap by 4 nucleotides ABIE53_004033 and ABIE53_004034 are separated by 24 nucleotides
ABIE53_004030: ABIE53_004030 - putative amidohydrolase, at 188,188 to 189,246
_004030
ABIE53_004031: ABIE53_004031 - DNA-binding transcriptional LysR family regulator, at 189,308 to 190,210
_004031
ABIE53_004032: ABIE53_004032 - DNA-binding transcriptional ArsR family regulator, at 190,271 to 190,606
_004032
ABIE53_004033: ABIE53_004033 - uncharacterized protein YndB with AHSA1/START domain, at 190,603 to 191,130
_004033
ABIE53_004034: ABIE53_004034 - hypothetical protein, at 191,155 to 191,577
_004034
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.356 kb on + strand, within ABIE53_004030 at 188.381 kb on + strand, within ABIE53_004030 at 188.382 kb on - strand, within ABIE53_004030 at 188.382 kb on - strand, within ABIE53_004030 at 188.382 kb on - strand, within ABIE53_004030 at 188.425 kb on + strand, within ABIE53_004030 at 188.672 kb on + strand, within ABIE53_004030 at 188.672 kb on + strand, within ABIE53_004030 at 188.672 kb on + strand, within ABIE53_004030 at 188.673 kb on - strand, within ABIE53_004030 at 188.673 kb on - strand, within ABIE53_004030 at 188.741 kb on + strand, within ABIE53_004030 at 188.741 kb on + strand, within ABIE53_004030 at 188.741 kb on + strand, within ABIE53_004030 at 188.741 kb on + strand, within ABIE53_004030 at 188.741 kb on + strand, within ABIE53_004030 at 188.741 kb on + strand, within ABIE53_004030 at 188.742 kb on - strand, within ABIE53_004030 at 188.742 kb on - strand, within ABIE53_004030 at 188.742 kb on - strand, within ABIE53_004030 at 188.742 kb on - strand, within ABIE53_004030 at 188.742 kb on - strand, within ABIE53_004030 at 188.742 kb on - strand, within ABIE53_004030 at 188.742 kb on - strand, within ABIE53_004030 at 188.746 kb on - strand, within ABIE53_004030 at 188.746 kb on - strand, within ABIE53_004030 at 188.858 kb on + strand, within ABIE53_004030 at 188.888 kb on + strand, within ABIE53_004030 at 188.888 kb on + strand, within ABIE53_004030 at 188.889 kb on - strand, within ABIE53_004030 at 188.889 kb on - strand, within ABIE53_004030 at 188.889 kb on - strand, within ABIE53_004030 at 188.925 kb on + strand, within ABIE53_004030 at 189.060 kb on + strand, within ABIE53_004030 at 189.061 kb on - strand, within ABIE53_004030 at 189.061 kb on - strand, within ABIE53_004030 at 189.271 kb on - strand at 189.304 kb on - strand at 189.403 kb on + strand, within ABIE53_004031 at 189.482 kb on - strand, within ABIE53_004031 at 189.805 kb on + strand, within ABIE53_004031 at 190.040 kb on + strand, within ABIE53_004031 at 190.040 kb on + strand, within ABIE53_004031 at 190.041 kb on - strand, within ABIE53_004031 at 190.621 kb on + strand at 190.885 kb on + strand, within ABIE53_004033 at 191.055 kb on + strand, within ABIE53_004033 at 191.055 kb on + strand, within ABIE53_004033 at 191.056 kb on - strand, within ABIE53_004033 at 191.056 kb on - strand, within ABIE53_004033 at 191.108 kb on - strand at 191.155 kb on - strand at 191.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lumichrome (C) remove 188,356 + ABIE53_004030 0.16 +0.1 188,381 + ABIE53_004030 0.18 +0.6 188,382 - ABIE53_004030 0.18 -0.3 188,382 - ABIE53_004030 0.18 -1.7 188,382 - ABIE53_004030 0.18 +1.1 188,425 + ABIE53_004030 0.22 +1.1 188,672 + ABIE53_004030 0.46 -1.7 188,672 + ABIE53_004030 0.46 +0.9 188,672 + ABIE53_004030 0.46 +1.1 188,673 - ABIE53_004030 0.46 -0.5 188,673 - ABIE53_004030 0.46 -0.1 188,741 + ABIE53_004030 0.52 -0.5 188,741 + ABIE53_004030 0.52 +0.4 188,741 + ABIE53_004030 0.52 -0.1 188,741 + ABIE53_004030 0.52 -0.3 188,741 + ABIE53_004030 0.52 +0.4 188,741 + ABIE53_004030 0.52 -0.7 188,742 - ABIE53_004030 0.52 +0.5 188,742 - ABIE53_004030 0.52 +0.2 188,742 - ABIE53_004030 0.52 +1.8 188,742 - ABIE53_004030 0.52 +0.2 188,742 - ABIE53_004030 0.52 +0.1 188,742 - ABIE53_004030 0.52 +0.2 188,742 - ABIE53_004030 0.52 -0.5 188,746 - ABIE53_004030 0.53 -1.2 188,746 - ABIE53_004030 0.53 +1.8 188,858 + ABIE53_004030 0.63 -0.8 188,888 + ABIE53_004030 0.66 -0.1 188,888 + ABIE53_004030 0.66 +0.9 188,889 - ABIE53_004030 0.66 -2.2 188,889 - ABIE53_004030 0.66 -1.7 188,889 - ABIE53_004030 0.66 -1.1 188,925 + ABIE53_004030 0.70 +0.2 189,060 + ABIE53_004030 0.82 +1.5 189,061 - ABIE53_004030 0.82 -0.4 189,061 - ABIE53_004030 0.82 +1.1 189,271 - -1.3 189,304 - +1.5 189,403 + ABIE53_004031 0.11 +1.5 189,482 - ABIE53_004031 0.19 +0.6 189,805 + ABIE53_004031 0.55 -1.1 190,040 + ABIE53_004031 0.81 -1.3 190,040 + ABIE53_004031 0.81 -0.9 190,041 - ABIE53_004031 0.81 +0.5 190,621 + +0.5 190,885 + ABIE53_004033 0.53 +0.9 191,055 + ABIE53_004033 0.86 -0.7 191,055 + ABIE53_004033 0.86 +0.3 191,056 - ABIE53_004033 0.86 +0.4 191,056 - ABIE53_004033 0.86 -1.8 191,108 - +0.4 191,155 - -1.3 191,155 - +0.5
Or see this region's nucleotide sequence