Experiment: 60 mM Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2867 and DvMF_2868 are separated by 209 nucleotides DvMF_2868 and DvMF_2869 are separated by 100 nucleotides DvMF_2869 and DvMF_2870 are separated by 325 nucleotides
DvMF_2867: DvMF_2867 - protein of unknown function DUF847 (RefSeq), at 3,620,910 to 3,621,488
_2867
DvMF_2868: DvMF_2868 - Transglycosylase-associated protein (RefSeq), at 3,621,698 to 3,621,940
_2868
DvMF_2869: DvMF_2869 - hypothetical protein (RefSeq), at 3,622,041 to 3,622,559
_2869
DvMF_2870: DvMF_2870 - OmpA/MotB domain protein (RefSeq), at 3,622,885 to 3,623,631
_2870
Position (kb)
3622
3623 Strain fitness (log2 ratio)
-1
0
1 at 3621.131 kb on - strand, within DvMF_2867 at 3621.213 kb on - strand, within DvMF_2867 at 3621.239 kb on + strand, within DvMF_2867 at 3621.254 kb on - strand, within DvMF_2867 at 3621.293 kb on + strand, within DvMF_2867 at 3621.343 kb on - strand, within DvMF_2867 at 3621.771 kb on + strand, within DvMF_2868 at 3622.155 kb on + strand, within DvMF_2869 at 3622.403 kb on + strand, within DvMF_2869 at 3622.516 kb on - strand at 3622.622 kb on + strand at 3622.669 kb on + strand at 3622.700 kb on - strand at 3622.876 kb on + strand at 3622.876 kb on + strand at 3622.886 kb on - strand at 3622.989 kb on - strand, within DvMF_2870 at 3623.028 kb on - strand, within DvMF_2870 at 3623.076 kb on + strand, within DvMF_2870 at 3623.180 kb on - strand, within DvMF_2870 at 3623.347 kb on + strand, within DvMF_2870 at 3623.460 kb on + strand, within DvMF_2870
Per-strain Table
Position Strand Gene LocusTag Fraction 60 mM Lactate (C) remove 3,621,131 - DvMF_2867 0.38 +0.0 3,621,213 - DvMF_2867 0.52 +0.1 3,621,239 + DvMF_2867 0.57 -1.3 3,621,254 - DvMF_2867 0.59 +0.3 3,621,293 + DvMF_2867 0.66 +0.7 3,621,343 - DvMF_2867 0.75 +1.7 3,621,771 + DvMF_2868 0.30 -0.6 3,622,155 + DvMF_2869 0.22 -0.2 3,622,403 + DvMF_2869 0.70 +1.2 3,622,516 - +0.4 3,622,622 + -0.2 3,622,669 + +0.4 3,622,700 - +0.5 3,622,876 + +0.4 3,622,876 + +0.0 3,622,886 - +1.0 3,622,989 - DvMF_2870 0.14 +0.1 3,623,028 - DvMF_2870 0.19 -0.3 3,623,076 + DvMF_2870 0.26 +1.1 3,623,180 - DvMF_2870 0.39 +0.4 3,623,347 + DvMF_2870 0.62 +0.2 3,623,460 + DvMF_2870 0.77 +0.3
Or see this region's nucleotide sequence