Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2840

Experiment: 60 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2839 and DvMF_2840 are separated by 186 nucleotidesDvMF_2840 and DvMF_2841 are separated by 498 nucleotides DvMF_2839: DvMF_2839 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 3,586,620 to 3,587,675 _2839 DvMF_2840: DvMF_2840 - diguanylate phosphodiesterase (RefSeq), at 3,587,862 to 3,589,073 _2840 DvMF_2841: DvMF_2841 - response regulator receiver protein (RefSeq), at 3,589,572 to 3,590,009 _2841 Position (kb) 3587 3588 3589 3590Strain fitness (log2 ratio) -1 0 1at 3587.718 kb on - strandat 3587.881 kb on + strandat 3587.998 kb on - strand, within DvMF_2840at 3588.096 kb on + strand, within DvMF_2840at 3588.133 kb on + strand, within DvMF_2840at 3588.204 kb on - strand, within DvMF_2840at 3588.250 kb on + strand, within DvMF_2840at 3588.258 kb on - strand, within DvMF_2840at 3588.422 kb on + strand, within DvMF_2840at 3588.471 kb on + strand, within DvMF_2840at 3588.509 kb on - strand, within DvMF_2840at 3588.509 kb on - strand, within DvMF_2840at 3588.833 kb on - strand, within DvMF_2840at 3589.344 kb on - strandat 3589.506 kb on - strandat 3589.698 kb on + strand, within DvMF_2841at 3589.717 kb on + strand, within DvMF_2841at 3589.817 kb on - strand, within DvMF_2841at 3589.820 kb on - strand, within DvMF_2841

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Per-strain Table

Position Strand Gene LocusTag Fraction 60 mM Lactate (C)
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3,587,718 - +0.1
3,587,881 + -0.3
3,587,998 - DvMF_2840 0.11 -0.1
3,588,096 + DvMF_2840 0.19 +0.3
3,588,133 + DvMF_2840 0.22 -0.4
3,588,204 - DvMF_2840 0.28 +0.1
3,588,250 + DvMF_2840 0.32 +0.1
3,588,258 - DvMF_2840 0.33 +0.1
3,588,422 + DvMF_2840 0.46 +0.2
3,588,471 + DvMF_2840 0.50 +0.1
3,588,509 - DvMF_2840 0.53 +0.1
3,588,509 - DvMF_2840 0.53 +0.0
3,588,833 - DvMF_2840 0.80 +0.3
3,589,344 - +0.5
3,589,506 - +0.3
3,589,698 + DvMF_2841 0.29 -0.6
3,589,717 + DvMF_2841 0.33 -0.0
3,589,817 - DvMF_2841 0.56 -0.9
3,589,820 - DvMF_2841 0.57 +0.1

Or see this region's nucleotide sequence