Experiment: 60 mM Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2374 and DvMF_2375 are separated by 199 nucleotides DvMF_2375 and DvMF_2376 are separated by 4 nucleotides DvMF_2376 and DvMF_2377 are separated by 380 nucleotides
DvMF_2374: DvMF_2374 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 2,998,829 to 3,000,175
_2374
DvMF_2375: DvMF_2375 - protein of unknown function DUF208 (RefSeq), at 3,000,375 to 3,001,025
_2375
DvMF_2376: DvMF_2376 - ribonuclease, Rne/Rng family (RefSeq), at 3,001,030 to 3,002,505
_2376
DvMF_2377: DvMF_2377 - Radical SAM domain protein (RefSeq), at 3,002,886 to 3,003,983
_2377
Position (kb)
3001
3002
3003 Strain fitness (log2 ratio)
-2
-1
0
1 at 3000.689 kb on + strand, within DvMF_2375 at 3000.702 kb on - strand, within DvMF_2375 at 3000.872 kb on + strand, within DvMF_2375 at 3000.913 kb on + strand, within DvMF_2375 at 3003.005 kb on + strand, within DvMF_2377 at 3003.189 kb on + strand, within DvMF_2377 at 3003.275 kb on - strand, within DvMF_2377 at 3003.287 kb on + strand, within DvMF_2377
Per-strain Table
Position Strand Gene LocusTag Fraction 60 mM Lactate (C) remove 3,000,689 + DvMF_2375 0.48 +0.8 3,000,702 - DvMF_2375 0.50 +0.6 3,000,872 + DvMF_2375 0.76 +0.6 3,000,913 + DvMF_2375 0.83 +0.7 3,003,005 + DvMF_2377 0.11 +0.9 3,003,189 + DvMF_2377 0.28 -0.7 3,003,275 - DvMF_2377 0.35 -1.1 3,003,287 + DvMF_2377 0.37 -1.9
Or see this region's nucleotide sequence