Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1790

Experiment: 60 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1788 and DvMF_1789 are separated by 176 nucleotidesDvMF_1789 and DvMF_1790 are separated by 57 nucleotidesDvMF_1790 and DvMF_1791 are separated by 228 nucleotides DvMF_1788: DvMF_1788 - SNARE associated Golgi protein (RefSeq), at 2,188,081 to 2,189,025 _1788 DvMF_1789: DvMF_1789 - phosphatidylserine decarboxylase (RefSeq), at 2,189,202 to 2,189,846 _1789 DvMF_1790: DvMF_1790 - CDP-diacylglycerol/serine O-phosphatidyltransferase (RefSeq), at 2,189,904 to 2,190,653 _1790 DvMF_1791: DvMF_1791 - 2-isopropylmalate synthase (RefSeq), at 2,190,882 to 2,192,426 _1791 Position (kb) 2189 2190 2191Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2188.977 kb on + strandat 2190.647 kb on + strandat 2190.713 kb on + strandat 2190.860 kb on - strandat 2191.060 kb on - strand, within DvMF_1791at 2191.090 kb on + strand, within DvMF_1791at 2191.098 kb on - strand, within DvMF_1791at 2191.238 kb on - strand, within DvMF_1791at 2191.420 kb on - strand, within DvMF_1791

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Per-strain Table

Position Strand Gene LocusTag Fraction 60 mM Lactate (C)
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2,188,977 + -0.3
2,190,647 + -0.1
2,190,713 + +0.7
2,190,860 - +0.7
2,191,060 - DvMF_1791 0.12 -3.5
2,191,090 + DvMF_1791 0.13 -4.0
2,191,098 - DvMF_1791 0.14 -5.0
2,191,238 - DvMF_1791 0.23 -4.2
2,191,420 - DvMF_1791 0.35 -4.6

Or see this region's nucleotide sequence