Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1416

Experiment: 60 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1414 and DvMF_1415 are separated by 154 nucleotidesDvMF_1415 and DvMF_1416 are separated by 24 nucleotidesDvMF_1416 and DvMF_1417 are separated by 51 nucleotides DvMF_1414: DvMF_1414 - Phosphoglycerate mutase (RefSeq), at 1,728,361 to 1,729,626 _1414 DvMF_1415: DvMF_1415 - hypothetical protein (RefSeq), at 1,729,781 to 1,730,092 _1415 DvMF_1416: DvMF_1416 - hypothetical protein (RefSeq), at 1,730,117 to 1,730,554 _1416 DvMF_1417: DvMF_1417 - heavy metal translocating P-type ATPase (RefSeq), at 1,730,606 to 1,733,521 _1417 Position (kb) 1730 1731Strain fitness (log2 ratio) -1 0 1 2at 1729.166 kb on + strand, within DvMF_1414at 1729.166 kb on + strand, within DvMF_1414at 1729.226 kb on + strand, within DvMF_1414at 1729.285 kb on + strand, within DvMF_1414at 1729.351 kb on + strand, within DvMF_1414at 1729.990 kb on + strand, within DvMF_1415at 1730.094 kb on - strandat 1730.184 kb on + strand, within DvMF_1416at 1730.499 kb on - strand, within DvMF_1416at 1730.514 kb on + strandat 1730.698 kb on - strandat 1730.755 kb on - strandat 1731.011 kb on + strand, within DvMF_1417at 1731.177 kb on - strand, within DvMF_1417at 1731.185 kb on + strand, within DvMF_1417at 1731.270 kb on - strand, within DvMF_1417at 1731.322 kb on + strand, within DvMF_1417

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Per-strain Table

Position Strand Gene LocusTag Fraction 60 mM Lactate (C)
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1,729,166 + DvMF_1414 0.64 -0.2
1,729,166 + DvMF_1414 0.64 +0.1
1,729,226 + DvMF_1414 0.68 +0.8
1,729,285 + DvMF_1414 0.73 -0.7
1,729,351 + DvMF_1414 0.78 -0.0
1,729,990 + DvMF_1415 0.67 +0.6
1,730,094 - +0.3
1,730,184 + DvMF_1416 0.15 +0.2
1,730,499 - DvMF_1416 0.87 +0.2
1,730,514 + +0.1
1,730,698 - +0.7
1,730,755 - +2.0
1,731,011 + DvMF_1417 0.14 +0.2
1,731,177 - DvMF_1417 0.20 -0.2
1,731,185 + DvMF_1417 0.20 +1.0
1,731,270 - DvMF_1417 0.23 +1.2
1,731,322 + DvMF_1417 0.25 -0.8

Or see this region's nucleotide sequence