Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1317

Experiment: 60 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1316 and DvMF_1317 are separated by 124 nucleotidesDvMF_1317 and DvMF_1318 overlap by 4 nucleotidesDvMF_1318 and DvMF_1319 are separated by 383 nucleotides DvMF_1316: DvMF_1316 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,608,412 to 1,609,479 _1316 DvMF_1317: DvMF_1317 - ABC transporter related (RefSeq), at 1,609,604 to 1,610,359 _1317 DvMF_1318: DvMF_1318 - BioY protein (RefSeq), at 1,610,356 to 1,610,925 _1318 DvMF_1319: DvMF_1319 - Lipocalin (RefSeq), at 1,611,309 to 1,612,091 _1319 Position (kb) 1609 1610 1611Strain fitness (log2 ratio) -1 0 1at 1608.772 kb on - strand, within DvMF_1316at 1608.985 kb on + strand, within DvMF_1316at 1609.299 kb on + strand, within DvMF_1316at 1609.342 kb on - strand, within DvMF_1316at 1609.411 kb on - strandat 1609.453 kb on + strandat 1609.453 kb on + strandat 1609.678 kb on + strandat 1609.819 kb on - strand, within DvMF_1317at 1609.953 kb on + strand, within DvMF_1317at 1610.218 kb on + strand, within DvMF_1317at 1610.226 kb on - strand, within DvMF_1317at 1610.291 kb on + strandat 1610.291 kb on + strandat 1610.291 kb on + strandat 1610.291 kb on + strandat 1610.299 kb on - strandat 1610.370 kb on - strandat 1610.679 kb on + strand, within DvMF_1318at 1610.810 kb on - strand, within DvMF_1318at 1610.843 kb on + strand, within DvMF_1318at 1611.063 kb on - strandat 1611.100 kb on + strandat 1611.190 kb on + strandat 1611.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 60 mM Lactate (C)
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1,608,772 - DvMF_1316 0.34 +0.2
1,608,985 + DvMF_1316 0.54 +0.5
1,609,299 + DvMF_1316 0.83 +0.1
1,609,342 - DvMF_1316 0.87 +0.4
1,609,411 - +0.3
1,609,453 + +0.3
1,609,453 + +0.3
1,609,678 + +0.2
1,609,819 - DvMF_1317 0.28 -0.4
1,609,953 + DvMF_1317 0.46 -0.3
1,610,218 + DvMF_1317 0.81 -0.0
1,610,226 - DvMF_1317 0.82 +0.1
1,610,291 + -0.2
1,610,291 + +0.3
1,610,291 + +0.3
1,610,291 + +0.2
1,610,299 - +0.2
1,610,370 - -0.1
1,610,679 + DvMF_1318 0.57 +0.2
1,610,810 - DvMF_1318 0.80 +0.1
1,610,843 + DvMF_1318 0.85 -0.2
1,611,063 - +0.9
1,611,100 + +0.5
1,611,190 + +1.1
1,611,208 - -0.1

Or see this region's nucleotide sequence