Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0883

Experiment: 60 mM Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0882 and DvMF_0883 are separated by 289 nucleotidesDvMF_0883 and DvMF_0884 are separated by 227 nucleotides DvMF_0882: DvMF_0882 - two component transcriptional regulator, winged helix family (RefSeq), at 1,064,865 to 1,065,557 _0882 DvMF_0883: DvMF_0883 - 3'-5' exonuclease (RefSeq), at 1,065,847 to 1,066,452 _0883 DvMF_0884: DvMF_0884 - no description, at 1,066,680 to 1,067,967 _0884 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -1 0 1at 1064.963 kb on - strand, within DvMF_0882at 1065.009 kb on - strand, within DvMF_0882at 1065.139 kb on - strand, within DvMF_0882at 1065.478 kb on - strand, within DvMF_0882at 1065.890 kb on - strandat 1066.156 kb on + strand, within DvMF_0883at 1066.818 kb on + strand, within DvMF_0884at 1066.825 kb on + strand, within DvMF_0884at 1066.825 kb on + strand, within DvMF_0884at 1066.826 kb on - strand, within DvMF_0884at 1066.833 kb on - strand, within DvMF_0884at 1066.833 kb on - strand, within DvMF_0884at 1066.849 kb on + strand, within DvMF_0884at 1067.076 kb on + strand, within DvMF_0884at 1067.293 kb on + strand, within DvMF_0884at 1067.388 kb on - strand, within DvMF_0884

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 60 mM Lactate (C)
remove
1,064,963 - DvMF_0882 0.14 -1.3
1,065,009 - DvMF_0882 0.21 -0.2
1,065,139 - DvMF_0882 0.40 -1.3
1,065,478 - DvMF_0882 0.88 -0.9
1,065,890 - -0.3
1,066,156 + DvMF_0883 0.51 +0.6
1,066,818 + DvMF_0884 0.11 +1.0
1,066,825 + DvMF_0884 0.11 +0.6
1,066,825 + DvMF_0884 0.11 +0.4
1,066,826 - DvMF_0884 0.11 +0.3
1,066,833 - DvMF_0884 0.12 -0.4
1,066,833 - DvMF_0884 0.12 +0.8
1,066,849 + DvMF_0884 0.13 +0.2
1,067,076 + DvMF_0884 0.31 -0.5
1,067,293 + DvMF_0884 0.48 +0.8
1,067,388 - DvMF_0884 0.55 +1.1

Or see this region's nucleotide sequence