Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0869

Experiment: 60 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0868 and DvMF_0869 are separated by 128 nucleotidesDvMF_0869 and DvMF_0870 are separated by 108 nucleotides DvMF_0868: DvMF_0868 - hypothetical protein (RefSeq), at 1,046,375 to 1,046,848 _0868 DvMF_0869: DvMF_0869 - hypothetical protein (RefSeq), at 1,046,977 to 1,047,213 _0869 DvMF_0870: DvMF_0870 - RNA binding S1 domain protein (RefSeq), at 1,047,322 to 1,049,592 _0870 Position (kb) 1046 1047 1048Strain fitness (log2 ratio) -1 0 1at 1046.022 kb on - strandat 1046.046 kb on + strandat 1046.054 kb on - strandat 1046.064 kb on - strandat 1046.064 kb on - strandat 1046.064 kb on - strandat 1046.066 kb on + strandat 1046.074 kb on - strandat 1046.074 kb on - strandat 1046.074 kb on - strandat 1046.076 kb on + strandat 1046.224 kb on + strandat 1046.273 kb on + strandat 1046.281 kb on - strandat 1046.791 kb on + strand, within DvMF_0868at 1047.024 kb on - strand, within DvMF_0869at 1047.168 kb on - strand, within DvMF_0869at 1047.216 kb on - strandat 1047.246 kb on - strandat 1047.423 kb on - strandat 1047.679 kb on + strand, within DvMF_0870at 1047.712 kb on + strand, within DvMF_0870at 1047.772 kb on - strand, within DvMF_0870at 1047.777 kb on + strand, within DvMF_0870at 1047.815 kb on + strand, within DvMF_0870at 1047.869 kb on + strand, within DvMF_0870at 1048.120 kb on + strand, within DvMF_0870at 1048.183 kb on - strand, within DvMF_0870

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Per-strain Table

Position Strand Gene LocusTag Fraction 60 mM Lactate (C)
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1,046,022 - +0.2
1,046,046 + +0.7
1,046,054 - +0.0
1,046,064 - +0.2
1,046,064 - +1.3
1,046,064 - +0.3
1,046,066 + +0.5
1,046,074 - +0.2
1,046,074 - +0.3
1,046,074 - +0.9
1,046,076 + +0.1
1,046,224 + +0.1
1,046,273 + +0.4
1,046,281 - +0.8
1,046,791 + DvMF_0868 0.88 +1.6
1,047,024 - DvMF_0869 0.20 +0.3
1,047,168 - DvMF_0869 0.81 +0.2
1,047,216 - +0.3
1,047,246 - +0.3
1,047,423 - +1.3
1,047,679 + DvMF_0870 0.16 -0.3
1,047,712 + DvMF_0870 0.17 +0.3
1,047,772 - DvMF_0870 0.20 +0.3
1,047,777 + DvMF_0870 0.20 +0.4
1,047,815 + DvMF_0870 0.22 +0.6
1,047,869 + DvMF_0870 0.24 +0.3
1,048,120 + DvMF_0870 0.35 +0.6
1,048,183 - DvMF_0870 0.38 +0.3

Or see this region's nucleotide sequence