Experiment: 60 mM Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0207 and DvMF_0208 are separated by 274 nucleotides DvMF_0208 and DvMF_0209 are separated by 30 nucleotides
DvMF_0207: DvMF_0207 - thiamine biosynthesis protein ThiC (RefSeq), at 225,567 to 226,856
_0207
DvMF_0208: DvMF_0208 - EAL domain protein (RefSeq), at 227,131 to 229,419
_0208
DvMF_0209: DvMF_0209 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 229,450 to 230,418
_0209
Position (kb) 227
228
229
230 Strain fitness (log2 ratio) -1
0
1
2 at 226.330 kb on + strand, within DvMF_0207 at 226.340 kb on + strand, within DvMF_0207 at 226.355 kb on + strand, within DvMF_0207 at 226.578 kb on - strand, within DvMF_0207 at 226.720 kb on + strand, within DvMF_0207 at 226.851 kb on + strand at 226.880 kb on - strand at 227.061 kb on + strand at 227.297 kb on - strand at 227.306 kb on - strand at 227.364 kb on - strand, within DvMF_0208 at 227.463 kb on - strand, within DvMF_0208 at 227.555 kb on - strand, within DvMF_0208 at 227.660 kb on + strand, within DvMF_0208 at 227.913 kb on + strand, within DvMF_0208 at 228.036 kb on + strand, within DvMF_0208 at 228.036 kb on + strand, within DvMF_0208 at 228.180 kb on + strand, within DvMF_0208 at 228.329 kb on - strand, within DvMF_0208 at 228.405 kb on + strand, within DvMF_0208 at 228.526 kb on - strand, within DvMF_0208 at 228.578 kb on - strand, within DvMF_0208 at 228.720 kb on - strand, within DvMF_0208 at 229.152 kb on - strand, within DvMF_0208 at 229.191 kb on + strand at 229.199 kb on - strand at 229.342 kb on + strand at 229.455 kb on - strand at 229.525 kb on + strand at 229.543 kb on + strand at 229.590 kb on - strand, within DvMF_0209 at 229.737 kb on + strand, within DvMF_0209 at 229.766 kb on + strand, within DvMF_0209 at 229.806 kb on - strand, within DvMF_0209 at 230.125 kb on + strand, within DvMF_0209 at 230.396 kb on - strand at 230.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 60 mM Lactate (C) remove 226,330 + DvMF_0207 0.59 +0.3 226,340 + DvMF_0207 0.60 +0.2 226,355 + DvMF_0207 0.61 +0.6 226,578 - DvMF_0207 0.78 +0.6 226,720 + DvMF_0207 0.89 -0.7 226,851 + -0.0 226,880 - +0.7 227,061 + +0.4 227,297 - +0.3 227,306 - +0.4 227,364 - DvMF_0208 0.10 +0.3 227,463 - DvMF_0208 0.15 +1.4 227,555 - DvMF_0208 0.19 +0.3 227,660 + DvMF_0208 0.23 +0.3 227,913 + DvMF_0208 0.34 +0.4 228,036 + DvMF_0208 0.40 +0.2 228,036 + DvMF_0208 0.40 +0.9 228,180 + DvMF_0208 0.46 +0.6 228,329 - DvMF_0208 0.52 +0.3 228,405 + DvMF_0208 0.56 -0.3 228,526 - DvMF_0208 0.61 -0.1 228,578 - DvMF_0208 0.63 -0.1 228,720 - DvMF_0208 0.69 +0.1 229,152 - DvMF_0208 0.88 -0.2 229,191 + +0.7 229,199 - +0.9 229,342 + -0.1 229,455 - +1.1 229,525 + +0.3 229,543 + +1.9 229,590 - DvMF_0209 0.14 +0.1 229,737 + DvMF_0209 0.30 +1.2 229,766 + DvMF_0209 0.33 +0.4 229,806 - DvMF_0209 0.37 +0.3 230,125 + DvMF_0209 0.70 -0.1 230,396 - -0.1 230,406 - +1.0
Or see this region's nucleotide sequence