Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0058 and DVU0059 overlap by 4 nucleotides DVU0059 and acrA are separated by 154 nucleotides
DVU0058: DVU0058 - efflux transporter, RND family, MFP subunit (TIGR), at 64,527 to 65,678
DVU0058
DVU0059: DVU0059 - AcrB/AcrD/AcrF family protein (TIGR), at 65,675 to 69,385
DVU0059
DVU0060: acrA - efflux transporter, RND family, MFP subunit (TIGR), at 69,540 to 70,724
acrA
Position (kb) 65
66
67
68
69
70 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 64.675 kb on + strand, within DVU0058 at 64.675 kb on + strand, within DVU0058 at 64.675 kb on + strand, within DVU0058 at 64.683 kb on - strand, within DVU0058 at 64.689 kb on + strand, within DVU0058 at 64.702 kb on - strand, within DVU0058 at 64.743 kb on + strand, within DVU0058 at 64.819 kb on - strand, within DVU0058 at 64.860 kb on - strand, within DVU0058 at 64.884 kb on + strand, within DVU0058 at 64.907 kb on + strand, within DVU0058 at 64.915 kb on - strand, within DVU0058 at 64.917 kb on + strand, within DVU0058 at 64.925 kb on - strand, within DVU0058 at 64.952 kb on + strand, within DVU0058 at 64.999 kb on - strand, within DVU0058 at 65.050 kb on - strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.115 kb on + strand, within DVU0058 at 65.116 kb on - strand, within DVU0058 at 65.151 kb on - strand, within DVU0058 at 65.177 kb on + strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.218 kb on - strand, within DVU0058 at 65.235 kb on + strand, within DVU0058 at 65.246 kb on + strand, within DVU0058 at 65.255 kb on - strand, within DVU0058 at 65.257 kb on + strand, within DVU0058 at 65.461 kb on + strand, within DVU0058 at 65.469 kb on + strand, within DVU0058 at 65.540 kb on - strand, within DVU0058 at 65.589 kb on - strand at 65.594 kb on - strand at 65.621 kb on - strand at 65.744 kb on - strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.790 kb on - strand at 65.790 kb on - strand at 65.798 kb on - strand at 65.818 kb on + strand at 65.876 kb on - strand at 65.946 kb on - strand at 65.953 kb on + strand at 66.014 kb on - strand at 66.019 kb on + strand at 66.022 kb on - strand at 66.024 kb on + strand at 66.024 kb on + strand at 66.081 kb on + strand, within DVU0059 at 66.118 kb on + strand, within DVU0059 at 66.120 kb on + strand, within DVU0059 at 66.120 kb on + strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.167 kb on - strand, within DVU0059 at 66.230 kb on + strand, within DVU0059 at 66.241 kb on + strand, within DVU0059 at 66.243 kb on - strand, within DVU0059 at 66.297 kb on - strand, within DVU0059 at 66.351 kb on - strand, within DVU0059 at 66.437 kb on + strand, within DVU0059 at 66.445 kb on - strand, within DVU0059 at 66.445 kb on - strand, within DVU0059 at 66.471 kb on + strand, within DVU0059 at 66.479 kb on - strand, within DVU0059 at 66.515 kb on + strand, within DVU0059 at 66.621 kb on + strand, within DVU0059 at 66.747 kb on + strand, within DVU0059 at 66.784 kb on - strand, within DVU0059 at 66.796 kb on + strand, within DVU0059 at 66.883 kb on + strand, within DVU0059 at 67.000 kb on + strand, within DVU0059 at 67.022 kb on - strand, within DVU0059 at 67.048 kb on + strand, within DVU0059 at 67.112 kb on - strand, within DVU0059 at 67.191 kb on - strand, within DVU0059 at 67.253 kb on - strand, within DVU0059 at 67.283 kb on - strand, within DVU0059 at 67.284 kb on + strand, within DVU0059 at 67.296 kb on + strand, within DVU0059 at 67.366 kb on + strand, within DVU0059 at 67.366 kb on + strand, within DVU0059 at 67.366 kb on + strand, within DVU0059 at 67.366 kb on + strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.374 kb on - strand, within DVU0059 at 67.396 kb on + strand, within DVU0059 at 67.457 kb on + strand, within DVU0059 at 67.470 kb on + strand, within DVU0059 at 67.548 kb on + strand, within DVU0059 at 67.560 kb on + strand, within DVU0059 at 67.570 kb on + strand, within DVU0059 at 67.570 kb on + strand, within DVU0059 at 67.578 kb on - strand, within DVU0059 at 67.602 kb on - strand, within DVU0059 at 67.639 kb on + strand, within DVU0059 at 67.639 kb on + strand, within DVU0059 at 67.743 kb on + strand, within DVU0059 at 67.751 kb on - strand, within DVU0059 at 67.753 kb on + strand, within DVU0059 at 67.770 kb on - strand, within DVU0059 at 67.779 kb on + strand, within DVU0059 at 67.781 kb on + strand, within DVU0059 at 67.782 kb on - strand, within DVU0059 at 67.805 kb on - strand, within DVU0059 at 67.805 kb on - strand, within DVU0059 at 67.811 kb on - strand, within DVU0059 at 67.816 kb on + strand, within DVU0059 at 67.816 kb on + strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.824 kb on - strand, within DVU0059 at 67.912 kb on + strand, within DVU0059 at 67.918 kb on + strand, within DVU0059 at 67.936 kb on + strand, within DVU0059 at 67.983 kb on + strand, within DVU0059 at 67.996 kb on - strand, within DVU0059 at 68.073 kb on - strand, within DVU0059 at 68.122 kb on + strand, within DVU0059 at 68.130 kb on - strand, within DVU0059 at 68.154 kb on + strand, within DVU0059 at 68.191 kb on - strand, within DVU0059 at 68.233 kb on - strand, within DVU0059 at 68.249 kb on - strand, within DVU0059 at 68.288 kb on + strand, within DVU0059 at 68.313 kb on + strand, within DVU0059 at 68.377 kb on + strand, within DVU0059 at 68.401 kb on + strand, within DVU0059 at 68.435 kb on + strand, within DVU0059 at 68.463 kb on - strand, within DVU0059 at 68.473 kb on - strand, within DVU0059 at 68.492 kb on - strand, within DVU0059 at 68.642 kb on - strand, within DVU0059 at 68.658 kb on + strand, within DVU0059 at 68.666 kb on - strand, within DVU0059 at 68.677 kb on - strand, within DVU0059 at 68.703 kb on + strand, within DVU0059 at 68.781 kb on + strand, within DVU0059 at 68.781 kb on + strand, within DVU0059 at 68.781 kb on + strand, within DVU0059 at 68.781 kb on + strand, within DVU0059 at 68.789 kb on - strand, within DVU0059 at 68.789 kb on - strand, within DVU0059 at 68.797 kb on - strand, within DVU0059 at 68.831 kb on + strand, within DVU0059 at 68.850 kb on + strand, within DVU0059 at 68.881 kb on + strand, within DVU0059 at 68.889 kb on + strand, within DVU0059 at 68.916 kb on - strand, within DVU0059 at 68.942 kb on + strand, within DVU0059 at 69.149 kb on + strand at 69.167 kb on + strand at 69.211 kb on - strand at 69.253 kb on + strand at 69.261 kb on - strand at 69.266 kb on - strand at 69.275 kb on + strand at 69.282 kb on + strand at 69.282 kb on + strand at 69.283 kb on - strand at 69.285 kb on + strand at 69.290 kb on - strand at 69.290 kb on - strand at 69.292 kb on + strand at 69.374 kb on - strand at 69.399 kb on + strand at 69.595 kb on - strand at 69.617 kb on + strand at 69.625 kb on - strand at 69.647 kb on + strand at 69.673 kb on - strand, within acrA at 69.673 kb on - strand, within acrA at 69.701 kb on - strand, within acrA at 69.738 kb on + strand, within acrA at 69.787 kb on - strand, within acrA at 69.806 kb on - strand, within acrA at 69.850 kb on - strand, within acrA at 69.850 kb on - strand, within acrA at 69.863 kb on + strand, within acrA at 69.885 kb on + strand, within acrA at 69.958 kb on + strand, within acrA at 70.018 kb on - strand, within acrA at 70.020 kb on + strand, within acrA at 70.020 kb on + strand, within acrA at 70.028 kb on - strand, within acrA at 70.030 kb on + strand, within acrA at 70.204 kb on + strand, within acrA at 70.211 kb on + strand, within acrA at 70.214 kb on - strand, within acrA at 70.256 kb on - strand, within acrA at 70.302 kb on + strand, within acrA at 70.302 kb on + strand, within acrA at 70.310 kb on - strand, within acrA at 70.310 kb on - strand, within acrA at 70.310 kb on - strand, within acrA at 70.357 kb on + strand, within acrA
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 64,675 + DVU0058 0.13 -0.4 64,675 + DVU0058 0.13 -0.2 64,675 + DVU0058 0.13 +1.3 64,683 - DVU0058 0.14 +1.3 64,689 + DVU0058 0.14 -1.2 64,702 - DVU0058 0.15 -0.4 64,743 + DVU0058 0.19 -1.7 64,819 - DVU0058 0.25 -0.7 64,860 - DVU0058 0.29 -1.5 64,884 + DVU0058 0.31 -2.8 64,907 + DVU0058 0.33 -1.1 64,915 - DVU0058 0.34 -0.9 64,917 + DVU0058 0.34 -1.9 64,925 - DVU0058 0.35 -0.4 64,952 + DVU0058 0.37 -1.4 64,999 - DVU0058 0.41 -1.5 65,050 - DVU0058 0.45 -0.9 65,073 + DVU0058 0.47 -1.3 65,073 + DVU0058 0.47 -1.3 65,073 + DVU0058 0.47 -0.2 65,115 + DVU0058 0.51 +0.2 65,116 - DVU0058 0.51 -1.5 65,151 - DVU0058 0.54 -0.7 65,177 + DVU0058 0.56 -1.4 65,185 - DVU0058 0.57 +0.9 65,185 - DVU0058 0.57 -0.9 65,185 - DVU0058 0.57 -1.1 65,210 + DVU0058 0.59 -1.1 65,210 + DVU0058 0.59 -1.9 65,210 + DVU0058 0.59 -1.2 65,210 + DVU0058 0.59 +0.9 65,218 - DVU0058 0.60 -1.1 65,235 + DVU0058 0.61 -1.3 65,246 + DVU0058 0.62 -0.1 65,255 - DVU0058 0.63 +0.9 65,257 + DVU0058 0.63 -0.9 65,461 + DVU0058 0.81 -1.9 65,469 + DVU0058 0.82 -1.1 65,540 - DVU0058 0.88 -0.1 65,589 - -1.7 65,594 - +0.2 65,621 - -1.1 65,744 - -0.8 65,782 + -1.1 65,782 + -0.4 65,782 + -0.1 65,782 + -0.7 65,790 - -2.4 65,790 - -1.1 65,798 - -1.9 65,818 + -2.2 65,876 - -2.4 65,946 - +0.9 65,953 + -1.9 66,014 - -1.1 66,019 + +0.9 66,022 - -0.9 66,024 + -1.3 66,024 + -1.0 66,081 + DVU0059 0.11 -1.4 66,118 + DVU0059 0.12 -2.1 66,120 + DVU0059 0.12 -0.1 66,120 + DVU0059 0.12 -0.1 66,128 - DVU0059 0.12 +1.5 66,128 - DVU0059 0.12 -1.3 66,128 - DVU0059 0.12 -0.1 66,167 - DVU0059 0.13 -1.1 66,230 + DVU0059 0.15 +0.9 66,241 + DVU0059 0.15 +1.5 66,243 - DVU0059 0.15 -0.9 66,297 - DVU0059 0.17 -0.7 66,351 - DVU0059 0.18 -0.7 66,437 + DVU0059 0.21 -1.1 66,445 - DVU0059 0.21 +0.5 66,445 - DVU0059 0.21 -1.3 66,471 + DVU0059 0.21 -0.7 66,479 - DVU0059 0.22 +0.6 66,515 + DVU0059 0.23 -1.0 66,621 + DVU0059 0.25 -0.7 66,747 + DVU0059 0.29 -1.5 66,784 - DVU0059 0.30 +0.9 66,796 + DVU0059 0.30 -0.7 66,883 + DVU0059 0.33 +0.9 67,000 + DVU0059 0.36 -1.6 67,022 - DVU0059 0.36 +0.5 67,048 + DVU0059 0.37 -0.8 67,112 - DVU0059 0.39 -0.7 67,191 - DVU0059 0.41 -0.2 67,253 - DVU0059 0.43 +0.3 67,283 - DVU0059 0.43 -1.6 67,284 + DVU0059 0.43 -0.4 67,296 + DVU0059 0.44 -0.1 67,366 + DVU0059 0.46 -1.9 67,366 + DVU0059 0.46 -0.5 67,366 + DVU0059 0.46 +0.9 67,366 + DVU0059 0.46 +0.7 67,374 - DVU0059 0.46 -1.1 67,374 - DVU0059 0.46 -1.6 67,374 - DVU0059 0.46 +0.9 67,374 - DVU0059 0.46 -0.9 67,374 - DVU0059 0.46 -0.7 67,396 + DVU0059 0.46 -0.1 67,457 + DVU0059 0.48 -1.0 67,470 + DVU0059 0.48 -1.5 67,548 + DVU0059 0.50 -0.0 67,560 + DVU0059 0.51 -1.1 67,570 + DVU0059 0.51 -1.1 67,570 + DVU0059 0.51 -1.9 67,578 - DVU0059 0.51 -1.4 67,602 - DVU0059 0.52 -0.1 67,639 + DVU0059 0.53 -0.3 67,639 + DVU0059 0.53 +0.9 67,743 + DVU0059 0.56 -0.7 67,751 - DVU0059 0.56 -0.7 67,753 + DVU0059 0.56 -0.7 67,770 - DVU0059 0.56 -0.9 67,779 + DVU0059 0.57 -0.9 67,781 + DVU0059 0.57 -1.2 67,782 - DVU0059 0.57 -0.9 67,805 - DVU0059 0.57 -0.8 67,805 - DVU0059 0.57 -0.4 67,811 - DVU0059 0.58 -0.1 67,816 + DVU0059 0.58 -0.9 67,816 + DVU0059 0.58 -0.7 67,824 - DVU0059 0.58 +0.9 67,824 - DVU0059 0.58 -0.9 67,824 - DVU0059 0.58 -0.5 67,824 - DVU0059 0.58 -0.9 67,824 - DVU0059 0.58 -1.0 67,824 - DVU0059 0.58 -0.2 67,912 + DVU0059 0.60 -1.4 67,918 + DVU0059 0.60 -0.5 67,936 + DVU0059 0.61 -1.2 67,983 + DVU0059 0.62 -2.9 67,996 - DVU0059 0.63 -0.5 68,073 - DVU0059 0.65 -0.4 68,122 + DVU0059 0.66 -0.3 68,130 - DVU0059 0.66 -2.7 68,154 + DVU0059 0.67 -0.2 68,191 - DVU0059 0.68 -1.3 68,233 - DVU0059 0.69 -1.7 68,249 - DVU0059 0.69 -0.1 68,288 + DVU0059 0.70 +1.0 68,313 + DVU0059 0.71 -1.5 68,377 + DVU0059 0.73 -1.7 68,401 + DVU0059 0.73 -1.1 68,435 + DVU0059 0.74 -0.1 68,463 - DVU0059 0.75 -1.1 68,473 - DVU0059 0.75 -1.1 68,492 - DVU0059 0.76 -0.0 68,642 - DVU0059 0.80 -1.5 68,658 + DVU0059 0.80 +1.5 68,666 - DVU0059 0.81 +0.3 68,677 - DVU0059 0.81 -1.2 68,703 + DVU0059 0.82 +1.9 68,781 + DVU0059 0.84 -1.5 68,781 + DVU0059 0.84 -1.4 68,781 + DVU0059 0.84 -1.0 68,781 + DVU0059 0.84 -0.9 68,789 - DVU0059 0.84 -0.7 68,789 - DVU0059 0.84 -1.1 68,797 - DVU0059 0.84 -0.0 68,831 + DVU0059 0.85 +0.5 68,850 + DVU0059 0.86 -0.3 68,881 + DVU0059 0.86 -0.1 68,889 + DVU0059 0.87 -0.4 68,916 - DVU0059 0.87 -2.1 68,942 + DVU0059 0.88 +0.9 69,149 + -0.7 69,167 + -1.6 69,211 - -0.9 69,253 + +0.9 69,261 - +0.9 69,266 - -0.1 69,275 + +0.3 69,282 + -1.5 69,282 + -0.7 69,283 - -0.7 69,285 + +0.9 69,290 - +0.2 69,290 - +0.9 69,292 + -1.0 69,374 - -0.1 69,399 + -0.0 69,595 - -0.2 69,617 + -0.8 69,625 - +0.4 69,647 + -0.3 69,673 - acrA DVU0060 0.11 +0.9 69,673 - acrA DVU0060 0.11 -0.2 69,701 - acrA DVU0060 0.14 +1.5 69,738 + acrA DVU0060 0.17 -0.6 69,787 - acrA DVU0060 0.21 -0.1 69,806 - acrA DVU0060 0.22 +0.1 69,850 - acrA DVU0060 0.26 -0.1 69,850 - acrA DVU0060 0.26 -0.3 69,863 + acrA DVU0060 0.27 +0.5 69,885 + acrA DVU0060 0.29 -0.2 69,958 + acrA DVU0060 0.35 -1.4 70,018 - acrA DVU0060 0.40 -1.7 70,020 + acrA DVU0060 0.41 -0.6 70,020 + acrA DVU0060 0.41 -0.1 70,028 - acrA DVU0060 0.41 -0.5 70,030 + acrA DVU0060 0.41 -1.3 70,204 + acrA DVU0060 0.56 +1.9 70,211 + acrA DVU0060 0.57 -0.2 70,214 - acrA DVU0060 0.57 -0.3 70,256 - acrA DVU0060 0.60 -0.2 70,302 + acrA DVU0060 0.64 -0.9 70,302 + acrA DVU0060 0.64 +0.1 70,310 - acrA DVU0060 0.65 -0.5 70,310 - acrA DVU0060 0.65 -0.4 70,310 - acrA DVU0060 0.65 -0.7 70,357 + acrA DVU0060 0.69 -0.7
Or see this region's nucleotide sequence