Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06510

Experiment: p-Coumaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06509 and H281DRAFT_06510 are separated by 338 nucleotidesH281DRAFT_06510 and H281DRAFT_06511 are separated by 145 nucleotidesH281DRAFT_06511 and H281DRAFT_06512 are separated by 236 nucleotides H281DRAFT_06509: H281DRAFT_06509 - hypothetical protein, at 56,651 to 57,133 _06509 H281DRAFT_06510: H281DRAFT_06510 - methyl-accepting chemotaxis protein, at 57,472 to 59,037 _06510 H281DRAFT_06511: H281DRAFT_06511 - reactive intermediate/imine deaminase, at 59,183 to 59,587 _06511 H281DRAFT_06512: H281DRAFT_06512 - hippurate hydrolase, at 59,824 to 61,035 _06512 Position (kb) 57 58 59 60Strain fitness (log2 ratio) -1 0 1at 56.494 kb on + strandat 56.681 kb on - strandat 56.814 kb on - strand, within H281DRAFT_06509at 57.290 kb on + strandat 57.440 kb on - strandat 57.713 kb on - strand, within H281DRAFT_06510at 57.907 kb on + strand, within H281DRAFT_06510at 58.330 kb on - strand, within H281DRAFT_06510at 59.185 kb on - strandat 59.329 kb on - strand, within H281DRAFT_06511at 59.696 kb on - strandat 59.712 kb on - strandat 59.867 kb on + strandat 59.868 kb on - strandat 59.868 kb on - strandat 59.990 kb on + strand, within H281DRAFT_06512at 59.990 kb on + strand, within H281DRAFT_06512at 59.990 kb on + strand, within H281DRAFT_06512at 59.991 kb on - strand, within H281DRAFT_06512

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
remove
56,494 + +0.1
56,681 - +0.0
56,814 - H281DRAFT_06509 0.34 -0.1
57,290 + -0.1
57,440 - +0.2
57,713 - H281DRAFT_06510 0.15 +1.1
57,907 + H281DRAFT_06510 0.28 +1.4
58,330 - H281DRAFT_06510 0.55 -0.1
59,185 - -0.9
59,329 - H281DRAFT_06511 0.36 -0.0
59,696 - -0.1
59,712 - +0.3
59,867 + +0.4
59,868 - +0.3
59,868 - -0.3
59,990 + H281DRAFT_06512 0.14 +0.6
59,990 + H281DRAFT_06512 0.14 -0.0
59,990 + H281DRAFT_06512 0.14 +0.5
59,991 - H281DRAFT_06512 0.14 +0.0

Or see this region's nucleotide sequence