Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06447

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06446 and H281DRAFT_06447 are separated by 742 nucleotidesH281DRAFT_06447 and H281DRAFT_06448 are separated by 94 nucleotides H281DRAFT_06446: H281DRAFT_06446 - molybdopterin synthase subunit MoaD (EC 2.8.1.12), at 51,737 to 51,994 _06446 H281DRAFT_06447: H281DRAFT_06447 - protein PsiE, at 52,737 to 53,195 _06447 H281DRAFT_06448: H281DRAFT_06448 - transcriptional regulator, LysR family, at 53,290 to 54,207 _06448 Position (kb) 52 53 54Strain fitness (log2 ratio) -1 0 1 2at 51.755 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 51.999 kb on + strandat 52.000 kb on - strandat 52.039 kb on + strandat 52.201 kb on - strandat 52.242 kb on - strandat 52.288 kb on - strandat 52.391 kb on + strandat 52.391 kb on + strandat 52.398 kb on + strandat 52.398 kb on + strandat 52.398 kb on + strandat 52.399 kb on - strandat 52.399 kb on - strandat 52.399 kb on - strandat 52.558 kb on + strandat 52.558 kb on + strandat 52.567 kb on + strandat 52.567 kb on + strandat 52.738 kb on + strandat 52.738 kb on + strandat 52.738 kb on + strandat 52.739 kb on - strandat 52.816 kb on - strand, within H281DRAFT_06447at 52.816 kb on - strand, within H281DRAFT_06447at 52.845 kb on + strand, within H281DRAFT_06447at 52.846 kb on - strand, within H281DRAFT_06447at 52.846 kb on - strand, within H281DRAFT_06447at 52.859 kb on + strand, within H281DRAFT_06447at 52.860 kb on - strand, within H281DRAFT_06447at 52.863 kb on - strand, within H281DRAFT_06447at 52.868 kb on + strand, within H281DRAFT_06447at 52.931 kb on + strand, within H281DRAFT_06447at 52.968 kb on + strand, within H281DRAFT_06447at 52.973 kb on - strand, within H281DRAFT_06447at 53.003 kb on - strand, within H281DRAFT_06447at 53.004 kb on + strand, within H281DRAFT_06447at 53.005 kb on - strand, within H281DRAFT_06447at 53.005 kb on - strand, within H281DRAFT_06447at 53.005 kb on - strand, within H281DRAFT_06447at 53.019 kb on + strand, within H281DRAFT_06447at 53.020 kb on - strand, within H281DRAFT_06447at 53.130 kb on + strand, within H281DRAFT_06447at 53.291 kb on + strandat 53.529 kb on - strand, within H281DRAFT_06448at 53.672 kb on - strand, within H281DRAFT_06448at 53.696 kb on + strand, within H281DRAFT_06448at 53.747 kb on - strand, within H281DRAFT_06448at 53.980 kb on + strand, within H281DRAFT_06448at 53.981 kb on - strand, within H281DRAFT_06448at 54.004 kb on - strandat 54.038 kb on + strand, within H281DRAFT_06448at 54.039 kb on - strand, within H281DRAFT_06448at 54.081 kb on - strand, within H281DRAFT_06448at 54.081 kb on - strand, within H281DRAFT_06448at 54.154 kb on - strandat 54.179 kb on + strandat 54.179 kb on + strandat 54.179 kb on + strandat 54.180 kb on - strandat 54.180 kb on - strandat 54.181 kb on + strandat 54.181 kb on + strandat 54.181 kb on + strandat 54.182 kb on - strandat 54.182 kb on - strandat 54.182 kb on - strandat 54.182 kb on - strandat 54.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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51,755 + +0.0
51,999 + -1.1
51,999 + -0.3
51,999 + +0.4
51,999 + +0.2
52,000 - -0.3
52,039 + +2.1
52,201 - +1.1
52,242 - +0.8
52,288 - +1.8
52,391 + -0.5
52,391 + +0.6
52,398 + -1.1
52,398 + +0.5
52,398 + +0.1
52,399 - +0.3
52,399 - -0.0
52,399 - +0.4
52,558 + -0.7
52,558 + -0.1
52,567 + +0.0
52,567 + -0.3
52,738 + -0.1
52,738 + -0.0
52,738 + -0.3
52,739 - -0.0
52,816 - H281DRAFT_06447 0.17 +0.1
52,816 - H281DRAFT_06447 0.17 +0.1
52,845 + H281DRAFT_06447 0.24 -0.1
52,846 - H281DRAFT_06447 0.24 +0.7
52,846 - H281DRAFT_06447 0.24 -0.5
52,859 + H281DRAFT_06447 0.27 +0.8
52,860 - H281DRAFT_06447 0.27 +0.3
52,863 - H281DRAFT_06447 0.27 -0.2
52,868 + H281DRAFT_06447 0.29 +0.5
52,931 + H281DRAFT_06447 0.42 -0.4
52,968 + H281DRAFT_06447 0.50 -0.4
52,973 - H281DRAFT_06447 0.51 +0.2
53,003 - H281DRAFT_06447 0.58 -0.1
53,004 + H281DRAFT_06447 0.58 +0.3
53,005 - H281DRAFT_06447 0.58 +0.0
53,005 - H281DRAFT_06447 0.58 +0.0
53,005 - H281DRAFT_06447 0.58 +0.0
53,019 + H281DRAFT_06447 0.61 +0.7
53,020 - H281DRAFT_06447 0.62 -0.2
53,130 + H281DRAFT_06447 0.86 +0.6
53,291 + -1.4
53,529 - H281DRAFT_06448 0.26 +0.5
53,672 - H281DRAFT_06448 0.42 -0.3
53,696 + H281DRAFT_06448 0.44 +0.4
53,747 - H281DRAFT_06448 0.50 -0.6
53,980 + H281DRAFT_06448 0.75 -0.3
53,981 - H281DRAFT_06448 0.75 +0.8
54,004 - -0.2
54,038 + H281DRAFT_06448 0.81 +0.6
54,039 - H281DRAFT_06448 0.82 +0.0
54,081 - H281DRAFT_06448 0.86 -1.1
54,081 - H281DRAFT_06448 0.86 -0.4
54,154 - +0.5
54,179 + +0.9
54,179 + -0.1
54,179 + +0.0
54,180 - +0.6
54,180 - -0.4
54,181 + -1.0
54,181 + +0.2
54,181 + +0.3
54,182 - -0.4
54,182 - -0.9
54,182 - +0.2
54,182 - +0.2
54,182 - -0.0

Or see this region's nucleotide sequence