Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06367

Experiment: p-Coumaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06365 and H281DRAFT_06366 are separated by 21 nucleotidesH281DRAFT_06366 and H281DRAFT_06367 are separated by 72 nucleotidesH281DRAFT_06367 and H281DRAFT_06368 are separated by 19 nucleotides H281DRAFT_06365: H281DRAFT_06365 - pilus assembly protein CpaC, at 36,974 to 38,701 _06365 H281DRAFT_06366: H281DRAFT_06366 - hypothetical protein, at 38,723 to 39,073 _06366 H281DRAFT_06367: H281DRAFT_06367 - pilus assembly protein CpaE, at 39,146 to 40,357 _06367 H281DRAFT_06368: H281DRAFT_06368 - pilus assembly protein CpaF, at 40,377 to 41,744 _06368 Position (kb) 39 40 41Strain fitness (log2 ratio) -1 0 1at 40.231 kb on - strand, within H281DRAFT_06367at 40.385 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
remove
40,231 - H281DRAFT_06367 0.90 +0.7
40,385 - +0.2

Or see this region's nucleotide sequence