Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06329

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06328 and H281DRAFT_06329 overlap by 44 nucleotidesH281DRAFT_06329 and H281DRAFT_06330 overlap by 4 nucleotides H281DRAFT_06328: H281DRAFT_06328 - transcriptional regulator, propionate catabolism operon regulatory protein, at 863 to 3,052 _06328 H281DRAFT_06329: H281DRAFT_06329 - transcriptional regulator, AraC family, at 3,009 to 3,419 _06329 H281DRAFT_06330: H281DRAFT_06330 - sarcosine oxidase subunit beta, at 3,416 to 4,585 _06330 Position (kb) 3 4Strain fitness (log2 ratio) -1 0 1at 2.490 kb on - strand, within H281DRAFT_06328at 2.492 kb on + strand, within H281DRAFT_06328at 2.574 kb on + strand, within H281DRAFT_06328at 2.575 kb on - strandat 2.575 kb on - strand, within H281DRAFT_06328at 2.675 kb on + strand, within H281DRAFT_06328at 2.675 kb on + strand, within H281DRAFT_06328at 2.769 kb on + strand, within H281DRAFT_06328at 3.025 kb on - strandat 3.262 kb on + strand, within H281DRAFT_06329at 3.262 kb on + strand, within H281DRAFT_06329at 3.399 kb on - strandat 3.580 kb on - strand, within H281DRAFT_06330at 3.876 kb on + strand, within H281DRAFT_06330at 3.950 kb on - strand, within H281DRAFT_06330at 4.001 kb on + strand, within H281DRAFT_06330at 4.001 kb on + strand, within H281DRAFT_06330at 4.297 kb on - strand, within H281DRAFT_06330

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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2,490 - H281DRAFT_06328 0.74 +0.9
2,492 + H281DRAFT_06328 0.74 +0.0
2,574 + H281DRAFT_06328 0.78 -0.1
2,575 - -1.3
2,575 - H281DRAFT_06328 0.78 -1.5
2,675 + H281DRAFT_06328 0.83 -0.0
2,675 + H281DRAFT_06328 0.83 +0.3
2,769 + H281DRAFT_06328 0.87 -0.5
3,025 - +0.0
3,262 + H281DRAFT_06329 0.62 +0.2
3,262 + H281DRAFT_06329 0.62 +0.4
3,399 - +0.6
3,580 - H281DRAFT_06330 0.14 +0.6
3,876 + H281DRAFT_06330 0.39 +0.1
3,950 - H281DRAFT_06330 0.46 +0.5
4,001 + H281DRAFT_06330 0.50 -0.1
4,001 + H281DRAFT_06330 0.50 -0.0
4,297 - H281DRAFT_06330 0.75 +0.2

Or see this region's nucleotide sequence