Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05830 and H281DRAFT_05831 are separated by 238 nucleotides H281DRAFT_05831 and H281DRAFT_05832 are separated by 223 nucleotides H281DRAFT_05832 and H281DRAFT_05833 are separated by 216 nucleotides
H281DRAFT_05830: H281DRAFT_05830 - hypothetical protein, at 107,344 to 107,595
_05830
H281DRAFT_05831: H281DRAFT_05831 - transcriptional regulator, IclR family, at 107,834 to 108,586
_05831
H281DRAFT_05832: H281DRAFT_05832 - hypothetical protein, at 108,810 to 109,022
_05832
H281DRAFT_05833: H281DRAFT_05833 - hypothetical protein, at 109,239 to 109,517
_05833
Position (kb)
107
108
109 Strain fitness (log2 ratio)
-2
-1
0
1 at 106.852 kb on + strand at 106.852 kb on + strand at 106.853 kb on - strand at 106.857 kb on + strand at 106.878 kb on - strand at 106.878 kb on - strand at 106.881 kb on + strand at 106.882 kb on - strand at 106.952 kb on - strand at 106.952 kb on - strand at 107.033 kb on + strand at 107.033 kb on + strand at 107.033 kb on + strand at 107.033 kb on + strand at 107.034 kb on - strand at 107.034 kb on - strand at 107.034 kb on - strand at 107.037 kb on + strand at 107.054 kb on + strand at 107.054 kb on + strand at 107.054 kb on + strand at 107.054 kb on + strand at 107.054 kb on + strand at 107.054 kb on + strand at 107.073 kb on + strand at 107.074 kb on - strand at 107.074 kb on - strand at 107.079 kb on + strand at 107.079 kb on + strand at 107.080 kb on - strand at 107.080 kb on - strand at 107.540 kb on + strand, within H281DRAFT_05830 at 107.540 kb on + strand, within H281DRAFT_05830 at 107.573 kb on - strand at 107.606 kb on - strand at 107.969 kb on + strand, within H281DRAFT_05831 at 107.969 kb on + strand, within H281DRAFT_05831 at 108.059 kb on + strand, within H281DRAFT_05831 at 108.170 kb on + strand, within H281DRAFT_05831 at 108.170 kb on + strand, within H281DRAFT_05831 at 108.171 kb on - strand, within H281DRAFT_05831 at 108.171 kb on - strand, within H281DRAFT_05831 at 108.312 kb on - strand, within H281DRAFT_05831 at 108.341 kb on + strand, within H281DRAFT_05831 at 108.341 kb on + strand, within H281DRAFT_05831 at 108.341 kb on + strand, within H281DRAFT_05831 at 108.341 kb on + strand, within H281DRAFT_05831 at 108.341 kb on + strand, within H281DRAFT_05831 at 108.342 kb on - strand, within H281DRAFT_05831 at 108.342 kb on - strand, within H281DRAFT_05831 at 108.342 kb on - strand, within H281DRAFT_05831 at 108.342 kb on - strand, within H281DRAFT_05831 at 108.395 kb on + strand, within H281DRAFT_05831 at 108.404 kb on - strand, within H281DRAFT_05831 at 108.579 kb on + strand at 108.579 kb on + strand at 108.580 kb on - strand at 108.584 kb on + strand at 108.584 kb on + strand at 108.595 kb on - strand at 108.595 kb on - strand at 108.663 kb on + strand at 108.663 kb on + strand at 108.663 kb on + strand at 108.664 kb on - strand at 108.667 kb on + strand at 108.667 kb on + strand at 108.667 kb on + strand at 108.668 kb on - strand at 108.668 kb on - strand at 108.668 kb on - strand at 108.695 kb on + strand at 108.696 kb on - strand at 108.705 kb on - strand at 108.705 kb on - strand at 108.705 kb on - strand at 108.707 kb on + strand at 108.707 kb on + strand at 108.708 kb on - strand at 108.708 kb on - strand at 108.765 kb on - strand at 108.765 kb on - strand at 109.020 kb on + strand at 109.021 kb on - strand at 109.021 kb on - strand at 109.021 kb on - strand at 109.021 kb on - strand at 109.210 kb on - strand at 109.517 kb on + strand at 109.517 kb on + strand at 109.517 kb on + strand at 109.538 kb on - strand at 109.538 kb on - strand at 109.538 kb on - strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.541 kb on + strand at 109.542 kb on - strand at 109.542 kb on - strand at 109.542 kb on - strand at 109.555 kb on - strand at 109.555 kb on - strand at 109.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 106,852 + +0.4 106,852 + -1.8 106,853 - -0.0 106,857 + +0.0 106,878 - +0.1 106,878 - +0.7 106,881 + -1.0 106,882 - -0.2 106,952 - +0.0 106,952 - -1.1 107,033 + -1.0 107,033 + +0.1 107,033 + +0.0 107,033 + +0.3 107,034 - -0.3 107,034 - -0.1 107,034 - -0.2 107,037 + -0.6 107,054 + +1.2 107,054 + +0.1 107,054 + +0.7 107,054 + -0.6 107,054 + +0.6 107,054 + +0.5 107,073 + -0.6 107,074 - +0.5 107,074 - -0.2 107,079 + -1.2 107,079 + -0.3 107,080 - +0.5 107,080 - +1.4 107,540 + H281DRAFT_05830 0.78 -0.3 107,540 + H281DRAFT_05830 0.78 -1.1 107,573 - +0.1 107,606 - +1.7 107,969 + H281DRAFT_05831 0.18 +0.0 107,969 + H281DRAFT_05831 0.18 -1.1 108,059 + H281DRAFT_05831 0.30 +0.2 108,170 + H281DRAFT_05831 0.45 -0.2 108,170 + H281DRAFT_05831 0.45 -0.3 108,171 - H281DRAFT_05831 0.45 -0.6 108,171 - H281DRAFT_05831 0.45 -0.5 108,312 - H281DRAFT_05831 0.63 +0.3 108,341 + H281DRAFT_05831 0.67 -0.0 108,341 + H281DRAFT_05831 0.67 -0.9 108,341 + H281DRAFT_05831 0.67 +0.3 108,341 + H281DRAFT_05831 0.67 -0.9 108,341 + H281DRAFT_05831 0.67 +0.1 108,342 - H281DRAFT_05831 0.67 -0.1 108,342 - H281DRAFT_05831 0.67 +0.4 108,342 - H281DRAFT_05831 0.67 +0.7 108,342 - H281DRAFT_05831 0.67 +0.1 108,395 + H281DRAFT_05831 0.75 +0.3 108,404 - H281DRAFT_05831 0.76 -0.4 108,579 + -0.2 108,579 + +1.0 108,580 - -0.2 108,584 + +0.2 108,584 + +0.5 108,595 - +0.2 108,595 - +0.8 108,663 + +0.3 108,663 + +1.3 108,663 + -0.3 108,664 - +0.1 108,667 + -0.5 108,667 + -0.4 108,667 + +0.9 108,668 - +0.4 108,668 - +0.0 108,668 - -0.5 108,695 + +0.6 108,696 - -0.4 108,705 - -0.0 108,705 - -0.7 108,705 - -0.4 108,707 + +0.5 108,707 + -0.6 108,708 - -0.1 108,708 - -0.3 108,765 - -0.2 108,765 - -0.4 109,020 + -0.9 109,021 - -0.3 109,021 - -0.5 109,021 - -0.1 109,021 - +0.1 109,210 - +1.4 109,517 + -0.4 109,517 + -0.6 109,517 + +0.5 109,538 - -0.1 109,538 - +0.5 109,538 - +0.5 109,541 + +0.1 109,541 + -0.2 109,541 + -0.1 109,541 + -0.2 109,541 + +0.0 109,541 + +1.0 109,542 - +0.3 109,542 - -0.0 109,542 - -0.5 109,555 - -0.4 109,555 - +0.0 109,555 - +0.0
Or see this region's nucleotide sequence