Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05688 and H281DRAFT_05689 are separated by 214 nucleotides H281DRAFT_05689 and H281DRAFT_05690 are separated by 40 nucleotides H281DRAFT_05690 and H281DRAFT_05691 are separated by 138 nucleotides
H281DRAFT_05688: H281DRAFT_05688 - Aromatic ring-opening dioxygenase, catalytic subunit, LigB family, at 105,342 to 106,127
_05688
H281DRAFT_05689: H281DRAFT_05689 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 106,342 to 106,941
_05689
H281DRAFT_05690: H281DRAFT_05690 - monothiol glutaredoxin, at 106,982 to 107,293
_05690
H281DRAFT_05691: H281DRAFT_05691 - [protein release factor]-glutamine N5-methyltransferase, at 107,432 to 108,301
_05691
Position (kb) 106
107 Strain fitness (log2 ratio) -1
0
1
2 at 105.361 kb on + strand at 105.361 kb on + strand at 105.361 kb on + strand at 105.361 kb on + strand at 105.361 kb on + strand at 105.361 kb on + strand at 105.361 kb on + strand at 105.388 kb on + strand at 105.389 kb on - strand at 105.418 kb on + strand at 105.819 kb on + strand, within H281DRAFT_05688 at 105.819 kb on + strand, within H281DRAFT_05688 at 105.820 kb on - strand at 105.820 kb on - strand, within H281DRAFT_05688 at 105.820 kb on - strand, within H281DRAFT_05688 at 105.820 kb on - strand, within H281DRAFT_05688 at 105.907 kb on + strand, within H281DRAFT_05688 at 105.907 kb on + strand, within H281DRAFT_05688 at 105.907 kb on + strand, within H281DRAFT_05688 at 105.908 kb on - strand, within H281DRAFT_05688 at 105.908 kb on - strand, within H281DRAFT_05688 at 105.928 kb on + strand, within H281DRAFT_05688 at 106.117 kb on - strand at 106.169 kb on + strand at 106.170 kb on - strand at 106.170 kb on - strand at 106.170 kb on - strand at 106.170 kb on - strand at 106.170 kb on - strand at 106.177 kb on + strand at 106.177 kb on + strand at 106.178 kb on - strand at 106.178 kb on - strand at 106.178 kb on - strand at 106.344 kb on - strand at 106.463 kb on + strand, within H281DRAFT_05689 at 106.464 kb on - strand, within H281DRAFT_05689 at 106.518 kb on + strand, within H281DRAFT_05689 at 106.519 kb on - strand, within H281DRAFT_05689 at 106.519 kb on - strand, within H281DRAFT_05689 at 106.519 kb on - strand, within H281DRAFT_05689 at 106.519 kb on - strand, within H281DRAFT_05689 at 106.738 kb on + strand, within H281DRAFT_05689 at 106.738 kb on + strand, within H281DRAFT_05689 at 106.739 kb on - strand, within H281DRAFT_05689 at 106.739 kb on - strand, within H281DRAFT_05689 at 107.070 kb on + strand, within H281DRAFT_05690 at 107.071 kb on - strand, within H281DRAFT_05690 at 107.314 kb on + strand at 107.314 kb on + strand at 107.315 kb on - strand at 107.315 kb on - strand at 107.320 kb on + strand at 107.328 kb on - strand at 107.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 105,361 + -0.1 105,361 + +0.0 105,361 + -0.4 105,361 + -0.2 105,361 + +0.7 105,361 + -0.6 105,361 + -0.4 105,388 + -0.0 105,389 - +1.3 105,418 + +0.8 105,819 + H281DRAFT_05688 0.61 +0.4 105,819 + H281DRAFT_05688 0.61 +0.5 105,820 - +0.6 105,820 - H281DRAFT_05688 0.61 +0.0 105,820 - H281DRAFT_05688 0.61 +0.8 105,820 - H281DRAFT_05688 0.61 +0.9 105,907 + H281DRAFT_05688 0.72 +0.6 105,907 + H281DRAFT_05688 0.72 -0.3 105,907 + H281DRAFT_05688 0.72 +0.8 105,908 - H281DRAFT_05688 0.72 +0.8 105,908 - H281DRAFT_05688 0.72 +0.3 105,928 + H281DRAFT_05688 0.75 +0.2 106,117 - +0.1 106,169 + +0.3 106,170 - +0.1 106,170 - +0.3 106,170 - -0.2 106,170 - +1.4 106,170 - +0.7 106,177 + -1.6 106,177 + +0.1 106,178 - -0.3 106,178 - +0.3 106,178 - -0.5 106,344 - -0.2 106,463 + H281DRAFT_05689 0.20 +0.7 106,464 - H281DRAFT_05689 0.20 +0.7 106,518 + H281DRAFT_05689 0.29 +1.4 106,519 - H281DRAFT_05689 0.29 +0.5 106,519 - H281DRAFT_05689 0.29 +0.4 106,519 - H281DRAFT_05689 0.29 +0.2 106,519 - H281DRAFT_05689 0.29 -0.6 106,738 + H281DRAFT_05689 0.66 +0.3 106,738 + H281DRAFT_05689 0.66 +2.3 106,739 - H281DRAFT_05689 0.66 -0.4 106,739 - H281DRAFT_05689 0.66 +0.7 107,070 + H281DRAFT_05690 0.28 +0.7 107,071 - H281DRAFT_05690 0.29 +1.3 107,314 + -0.2 107,314 + +0.9 107,315 - +0.2 107,315 - +0.3 107,320 + -0.2 107,328 - +1.5 107,397 - +0.7
Or see this region's nucleotide sequence