Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05640 and H281DRAFT_05641 are separated by 93 nucleotides H281DRAFT_05641 and H281DRAFT_05642 overlap by 4 nucleotides H281DRAFT_05642 and H281DRAFT_05643 are separated by 88 nucleotides
H281DRAFT_05640: H281DRAFT_05640 - thiamine-phosphate diphosphorylase, at 64,159 to 65,271
_05640
H281DRAFT_05641: H281DRAFT_05641 - phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein, at 65,365 to 66,186
_05641
H281DRAFT_05642: H281DRAFT_05642 - phospholipid/cholesterol/gamma-HCH transport system permease protein, at 66,183 to 66,962
_05642
H281DRAFT_05643: H281DRAFT_05643 - phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein, at 67,051 to 67,581
_05643
Position (kb) 65
66
67 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 65.330 kb on + strand at 65.330 kb on + strand at 65.331 kb on - strand at 65.347 kb on + strand at 65.387 kb on + strand at 65.387 kb on + strand at 65.866 kb on + strand, within H281DRAFT_05641 at 65.866 kb on + strand, within H281DRAFT_05641 at 65.866 kb on + strand, within H281DRAFT_05641 at 65.867 kb on - strand, within H281DRAFT_05641 at 66.004 kb on + strand, within H281DRAFT_05641 at 66.004 kb on + strand, within H281DRAFT_05641 at 66.004 kb on + strand, within H281DRAFT_05641 at 66.004 kb on + strand, within H281DRAFT_05641 at 66.005 kb on - strand, within H281DRAFT_05641 at 66.011 kb on - strand at 66.094 kb on - strand, within H281DRAFT_05641 at 66.334 kb on + strand, within H281DRAFT_05642 at 66.335 kb on - strand, within H281DRAFT_05642 at 66.339 kb on - strand, within H281DRAFT_05642 at 66.339 kb on - strand, within H281DRAFT_05642 at 66.343 kb on - strand, within H281DRAFT_05642 at 66.408 kb on + strand, within H281DRAFT_05642 at 66.409 kb on - strand, within H281DRAFT_05642 at 66.694 kb on - strand, within H281DRAFT_05642 at 66.847 kb on - strand, within H281DRAFT_05642 at 66.903 kb on + strand at 66.960 kb on + strand at 67.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 65,330 + -0.4 65,330 + +0.3 65,331 - -1.0 65,347 + +0.1 65,387 + -0.6 65,387 + -2.4 65,866 + H281DRAFT_05641 0.61 -1.4 65,866 + H281DRAFT_05641 0.61 -3.4 65,866 + H281DRAFT_05641 0.61 -3.3 65,867 - H281DRAFT_05641 0.61 -3.0 66,004 + H281DRAFT_05641 0.78 -0.8 66,004 + H281DRAFT_05641 0.78 -3.1 66,004 + H281DRAFT_05641 0.78 -2.5 66,004 + H281DRAFT_05641 0.78 -3.6 66,005 - H281DRAFT_05641 0.78 -1.8 66,011 - -0.7 66,094 - H281DRAFT_05641 0.89 -1.9 66,334 + H281DRAFT_05642 0.19 -0.1 66,335 - H281DRAFT_05642 0.19 -3.8 66,339 - H281DRAFT_05642 0.20 -0.5 66,339 - H281DRAFT_05642 0.20 +0.6 66,343 - H281DRAFT_05642 0.21 -2.4 66,408 + H281DRAFT_05642 0.29 -1.2 66,409 - H281DRAFT_05642 0.29 -1.3 66,694 - H281DRAFT_05642 0.66 -2.3 66,847 - H281DRAFT_05642 0.85 -1.9 66,903 + -1.4 66,960 + -1.7 67,016 + -0.9
Or see this region's nucleotide sequence